Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02911 ATGTTGTTCAACACAGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTATGTGGGTTCGGGGGTTTTCTCGACTTACCAGTGATTGTGCAATCGGTCATTTGAGAACTCATTCAGGAACTTTTTCCGATCGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTGCATCAGCTTCATGGTGCATATGACTCACTGAAGATAAAAGTCAGAATCAAAGTTCTTTCAGGCTTGGTTCGGGGTATGGTGGCTACCGAAGCTAAGAAAGCTCAATCAAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATATCACCCTAAGGTTCTTCGTTTGAATTTGATGGAATCCCCTAAAATGAACACTAGAGAAGCTTGGATATCATCACATGAATTAGACGTTTCTCAGAAGTGCCTTAAAAGCTATTTTGATGAACCGATCATGTTTACAGCTCCTGATGTGACTCCTGACAGTACTCCTGACGTAGAGTCTCCTTTTACCGTCACTGATATTGGAACATCATCAATATCGAGCTCGGATGTGGGCAGTTCGTCCTTGTTCTCTGGGATTTGTGGAAGCTTGAGAAATGATTCCAGAACAGCTGTCGACAGAGGGAGAAATATGTCTGGATCTGAATATGATTCTGAAAGTGAAAAGCAAACTCCCTCAGTTTCATATTTCCAGCGTTGTATGGTTGATATTATGAGTTCCCGGCGTAAATTCCAGCAACATGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCAGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGTCTACTCTTTCTGTAGAACCTAGCCATGATGTGGCACATCGGAGTACTGATATTAGCTCAAGCAGAAACATAAGGAACACGGTATCATTGTCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTATGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCTGAACTTGAAGTTGCTACAAGTGGCTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGGTCTGTGCACCGAGGCATCTTATCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCTAGTACACAGGGAGATCGAGAATTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGAAACGTAGTGATGCTTATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTTTATGGAAGAAATCGTGAACCATTGCAATGGTCGGCACGCCAGAAAATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCATCGTGATATCCGTCCAAACAATATCCTCCTTACTCATGATTTTGAGCCACTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAACCGGATGGTGACCTAGCAGTAGAAACCAGAATCCTTGGGAGATTTGGCTACCTGGCTCCTGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCCGATACATACTCATTTGGCGTTGTCTTGCTGGAACTTGTGACTGGACGCAAAGCAATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCACGAAACCTGTTGAGAAAAAATGCAATCTCTGAACTAGTTGATCCATGTTTGAGGAACTGTTATTCAGACGAGGAAGTTCACCGCATGCTGCAATGCGCTTCCTTGTGCATAAAGCGTGATCCGTATGTAAGACCGCGTGCTTCGGGTGTTGGAGGGCGACATCGTTCTGTAAAGCAGCAGCCATATAGGAGGCCATGTTGGAAAATTTTGCAGAGTTGTAACGTCATTTCGGGAGACGCAACATCGGAAACTACAGTTGGAAGAAGCTCTACGCTCATCCATCCAACTGCTGTCGTACATCCAAATGCTGTCATTGGCGAGGATGGGTATATTGGTCCATTTTGTACTGTGGGAGCCTTTGCAAAGCTGGGAAATGGTTGCCAATTGTATCCTGGGAGCCACATTTTTGGGTGTACAGAATTAGGGGATCGATGTGTCTTGATGACTGGCGCTATAGTTGGCGAGGACATTCCTGGTCGGACAGTCATTGGGTGTAATAACAAAATAGGTCACCATGCAGTGGTTGGCATTAGATGTCAAGACATGAAATATAAGCCAGGGGATGAATGTTTTCTTGATATTGGAGATAACAATGACATAAGAGAGCACTCATCAGTCCACCGATCTTCGAAGTCCAGTGATGTGACAGCTATTGGTGATAACAATCTCATAATGGGTTCCTGTCATATTGCTCATGATTGCAAGATTGGTAACAACAATATTTTTGCAAATAATACTCTTTTAGCCGGCCACGTTGTGGTGGAGGACTATGTTCACACAGGAGGCACCACTGCTGTTCATCAATTCTGTCATGTTGGTTCTTTCTCATTTGTTGCTGCGGGTTCAATGGTTTCACAAGATGTCCCCAAATATATGATGGTGGGGGGAGAAAGACCAGAACTACGTGGGTTAAATCTAGAGGGACTTCGGCGCAATGGATTCACAGTGGAAGAGATCATTGGCTTGAGATCTGCATACAGGAAGATATTCATGTCTACTGATGCAAATTCTGAAGGGTTGGAAGAACGTCTCAACGAAGTGATACTGTTGATTGGTGGAGTATTCAAGAGTTGTATGACATTTGTAAGATCGTTAAGGTCAGCACCTTGA 2841 43.75 MLFNTGDHIKLLVVIPSHQSSMWVRGFSRLTSDCAIGHLRTHSGTFSDRKDDIVHSCSQMVHQLHGAYDSLKIKVRIKVLSGLVRGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKYHPKVLRLNLMESPKMNTREAWISSHELDVSQKCLKSYFDEPIMFTAPDVTPDSTPDVESPFTVTDIGTSSISSSDVGSSSLFSGICGSLRNDSRTAVDRGRNMSGSEYDSESEKQTPSVSYFQRCMVDIMSSRRKFQQHAMEESQNAHHRPPAPTRQGLVKKMSTLSVEPSHDVAHRSTDISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGILSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNREPLQWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKNAISELVDPCLRNCYSDEEVHRMLQCASLCIKRDPYVRPRASGVGGRHRSVKQQPYRRPCWKILQSCNVISGDATSETTVGRSSTLIHPTAVVHPNAVIGEDGYIGPFCTVGAFAKLGNGCQLYPGSHIFGCTELGDRCVLMTGAIVGEDIPGRTVIGCNNKIGHHAVVGIRCQDMKYKPGDECFLDIGDNNDIREHSSVHRSSKSSDVTAIGDNNLIMGSCHIAHDCKIGNNNIFANNTLLAGHVVVEDYVHTGGTTAVHQFCHVGSFSFVAAGSMVSQDVPKYMMVGGERPELRGLNLEGLRRNGFTVEEIIGLRSAYRKIFMSTDANSEGLEERLNEVILLIGGVFKSCMTFVRSLRSAP* 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25529067 25541275 + CsaV3_1G040270.1 Csa01g02911 517408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02911 946 Gene3D Transferase(Phosphotransferase) domain 1 437 642 - -
Csa01g02911 946 Pfam Protein tyrosine and serine/threonine kinase 365 605 IPR001245 GO:0004672|GO:0006468
Csa01g02911 946 Gene3D Hexapeptide repeat proteins 663 881 - -
Csa01g02911 946 ProSiteProfiles Protein kinase domain profile. 361 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02911 946 CDD STKc_IRAK 367 627 - -
Csa01g02911 946 Pfam Udp N-acetylglucosamine O-acyltransferase; Domain 2 864 924 IPR029098 -
Csa01g02911 946 PANTHER OS01G0253100 PROTEIN 5 627 IPR045271 GO:0004714|GO:0006468
Csa01g02911 946 SUPERFAMILY Trimeric LpxA-like enzymes 665 874 IPR011004 -
Csa01g02911 946 Gene3D - 882 945 IPR037157 -
Csa01g02911 946 CDD LbH_UDP-GlcNAc_AT 670 924 IPR010137 GO:0008610|GO:0008780
Csa01g02911 946 Pfam Bacterial transferase hexapeptide (six repeats) 795 826 IPR001451 -
Csa01g02911 946 Gene3D Phosphorylase Kinase; domain 1 332 436 - -
Csa01g02911 946 PANTHER - 5 627 - -
Csa01g02911 946 SUPERFAMILY Protein kinase-like (PK-like) 344 629 IPR011009 -
Csa01g02911 946 SMART tyrkin_6 361 634 IPR020635 GO:0004713|GO:0006468
Csa01g02911 946 MobiDBLite consensus disorder prediction 220 242 - -
Csa01g02911 946 ProSitePatterns Tyrosine protein kinases specific active-site signature. 482 494 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02911 Csa-Chr1:25529067 Csa03g04090 Csa-Chr3:35841358 0 dispersed
Csa06g03542 Csa-Chr6:28815299 Csa01g02911 Csa-Chr1:25529067 2.85E-09 dispersed
Csa01g02911 Csa-Chr1:25529067 Csa05g03083 Csa-Chr5:30852236 1.02E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77844 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02911 - - csv:101208373 1252.65