Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02931 ATGGAGGAGGTTCTGATTCTTCAGCTGGTGATTTTTTGTCTCTTCATTGGTGCTAATGCTTCTGAGCTTGGGGAAATTGCTGGATTCAGAAACTCTCCACCCCCTTCAACTTTTTCTGCATTTCCTCCAGTTTTAGGATTCAGCAACATTAATGGACCAAGCTCAGTGCCTCAGCAAAACGAGTCAACTGTGCCACTACCGGTTATGTACCCACCAATTGCTTCAGGTCCTTTGCCTGATACAATCAAAGGGTCTATTCCGTCTGCTTCACCTCATGCTTCGACCGAGTCGCCACCATTTAATAGTATGCCTCAGCCACTTTTACCAGCTCAACCAAATGCTCCATCGATTTCACCAATTACACCAGAGCCAGAAGGTTCAGCTGTATCATCTTCAAATTCTCCACATTATCCTCCAGCAAGTCCCTCGCCACATGAGCAAACAAATACTTCATCAAATGTAGCTCCAACCCCTGAGCCAATTTCTCCAGCGAGCAAGTTGCCTAAGGACTCACCGGTTAGTCATCCGGTATTTCCTGTAAGACCTCCATCCATATTACCAGAGCCCAATATCTCTCCAGCAATAGCTATTTCCCCGAAAGCTGGTGACAAAAAGAGATTAGAAGCACCAGCAGCCACACCTTATAATACACTTCCCAAGTATATGTCGCCAGTGAATCATTCCTCAGAAGAAGCTCCTTCCAGTCACAATCATTCTCGCGACACTCAACCGCCGATCCTTCCACCACAAAAAGCTCCATTTCATAGAGTAAATCTTTCTCCAACTTCTCCTCCTTTGCCCTCCAATTATAAGCATCACAGAAGCAAGAATCATATCAGTCACGCACCTGCACCATCATATCCAATTTCCTCCCACACAACAAAAGCACCAGGTCCAGTTATTTCTACAGCACAACATTCACCAGGAAGAAGACACCATTCTCCACCCCCGAAATCAGAACCTTCGCCAATATCTCCTTTACATTATGCTCCGCCACCACTTGTGGTGCATGTTTCACCTTCTCCTTCACCACACCAAAAAATATCTGGGCATACTAGAAGACATTTTTATCCTCCTAAAGCTTCCCCATCGAAACCTTCGGCAAAAAGCCCGAAGATGTCACCAATTCATACTTTGCCTCCTCCACCTCCCAATGAAGATTGTTTGACTACCCAGTGCATCGAGCCATATACAAATACTCCCCCAGGATCTCCCTGCGGTTGTGTTTGGCCGATGCAAATTGGACTACGCCTTAGTGTTTCGCTATATACCTTCTTCCCTCTGGTCTCAGAGCTGGCAGCGGAAATTGCTGTTGGGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCGGATAAGACTGTTATTCTTATTGACTTAGTGCCACTCGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTATCAAAGGTTTTGGCATAAGAAGGTTTCAATCAAAGCTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGACTCAGGAATAGAAAACGAGCCTTATTTCAGTAATAGTAACGACGCGAGGGCAGTAAAACCAATTGGTGTTGATGTGCAGAACAGACAGCACAAAAATAAGCTAAGTGGTGGTATAATTGCCATTGTTGCGCTATCAACTACTGTTGCCGTGGTCTTATGTGTTGCAACTGCTTGGATTTTACTCTTCAAACGAAATGATGGCCTTTGTCAGCCAAAACCAACTCCACATGTTTCATTATCCTCCCTCAATAAGCCATCAGGTGCTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTGTCCATCGGATCTAGCATTGCCCCATATTCAGGATCAGCCAAGACATTCAGTGCCCCTGACATTGAGAGAGCCACCAATAATTTTGATCCTTCAAGAATATTGGGAGAGGGGGGCTTTGGACGTGTTTATAGAGGCATTCTCGAAGATGGTACGGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCTTCAGGGTGGTCGAGAATTCTTGGCTGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCTCCCTAGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGAATCCCGGGTCAAGATAGCACTCGGCGCTGCTAGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATTTTGTTAGAACATGATTTTACACCAAAAGTTTCTGACTTTGGATTGGCAAGAACTGCAATGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGATACGTAGCGCCAGAATATGCGATGACTGGTCATCTACTTGTGAAGAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTACTAACTGGGAGGAAACCAGTAGATATGTCGCAACCGCCTGGTGAAGAAAATCTGGTTTCTTGGGCGCGTCCTCTACTCACAAGCAAAGAAGGCCTAGATGTTATAATTGACAAATCAATAGATTCTAATGTTCCTTTTGAAAATATTGCTAAAGTAGCAGCAATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGTGAGGTAGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACACAACTCGAGAAACAAGCTCACATGCTGGTTCGAGCCCAGAGAGTTCAACTATCGATACAAATGATGATGAAGCATCAAGTTCAAGATACATGCTAGACTCTTTCCATAGTGAATATTTAGTACCTAACTCATTTCCAGGTCTAGATAGCATCGATACACATCTCTCAATTTCAGACCTGTTAAATACTTCGATCGGTAATGGGAAACAAGAATCTAGATCACTTGAAAGATGCTTCAGTTCTAGTCCTCATAGAATCGGAAAAGGTAAGAGAAATTTTTGGGAAAGAATGAGAAGATACTCGGGAAATAGCATAAGTGAACATGGTATGCCTACTAAAACATGGTCAGGTTCTACTTAA 3153 43.64 MEEVLILQLVIFCLFIGANASELGEIAGFRNSPPPSTFSAFPPVLGFSNINGPSSVPQQNESTVPLPVMYPPIASGPLPDTIKGSIPSASPHASTESPPFNSMPQPLLPAQPNAPSISPITPEPEGSAVSSSNSPHYPPASPSPHEQTNTSSNVAPTPEPISPASKLPKDSPVSHPVFPVRPPSILPEPNISPAIAISPKAGDKKRLEAPAATPYNTLPKYMSPVNHSSEEAPSSHNHSRDTQPPILPPQKAPFHRVNLSPTSPPLPSNYKHHRSKNHISHAPAPSYPISSHTTKAPGPVISTAQHSPGRRHHSPPPKSEPSPISPLHYAPPPLVVHVSPSPSPHQKISGHTRRHFYPPKASPSKPSAKSPKMSPIHTLPPPPPNEDCLTTQCIEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVGVFVKQSQVRIIGANAANQQPDKTVILIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDSGIENEPYFSNSNDARAVKPIGVDVQNRQHKNKLSGGIIAIVALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVSLSSLNKPSGAGGSVMATMPSSASLSIGSSIAPYSGSAKTFSAPDIERATNNFDPSRILGEGGFGRVYRGILEDGTEVAVKVLKRDDLQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRSLVYELIPNGSVESHLHGVDKETAPLDWESRVKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVSWARPLLTSKEGLDVIIDKSIDSNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNTTRETSSHAGSSPESSTIDTNDDEASSSRYMLDSFHSEYLVPNSFPGLDSIDTHLSISDLLNTSIGNGKQESRSLERCFSSSPHRIGKGKRNFWERMRRYSGNSISEHGMPTKTWSGST* 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25716837 25723367 - CsaV3_1G040470.1 Csa01g02931 517428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02931 1050 MobiDBLite consensus disorder prediction 102 119 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 77 377 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 318 339 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 87 101 - -
Csa01g02931 1050 SUPERFAMILY Protein kinase-like (PK-like) 630 923 IPR011009 -
Csa01g02931 1050 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 209 1049 - -
Csa01g02931 1050 Gene3D Transferase(Phosphotransferase) domain 1 726 947 - -
Csa01g02931 1050 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Csa01g02931 1050 ProSiteProfiles Protein kinase domain profile. 650 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02931 1050 PANTHER OS01G0750732 PROTEIN 209 1049 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 143 159 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 175 189 - -
Csa01g02931 1050 Gene3D Phosphorylase Kinase; domain 1 626 725 - -
Csa01g02931 1050 CDD STKc_IRAK 656 924 - -
Csa01g02931 1050 Pfam Protein tyrosine and serine/threonine kinase 654 923 IPR001245 GO:0004672|GO:0006468
Csa01g02931 1050 MobiDBLite consensus disorder prediction 284 301 - -
Csa01g02931 1050 MobiDBLite consensus disorder prediction 934 955 - -
Csa01g02931 1050 ProSitePatterns Protein kinases ATP-binding region signature. 656 678 IPR017441 GO:0005524
Csa01g02931 1050 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02931 Csa-Chr1:25716837 Csa04g00130 Csa-Chr4:737541 7.57E-121 dispersed
Csa05g02336 Csa-Chr5:25732365 Csa01g02931 Csa-Chr1:25716837 2.19E-91 dispersed
Csa05g03083 Csa-Chr5:30852236 Csa01g02931 Csa-Chr1:25716837 5.04E-100 dispersed
Csa01g01328 Csa-Chr1:8562065 Csa01g02931 Csa-Chr1:25716837 1.13E-88 transposed
Csa03g02648 Csa-Chr3:24972443 Csa01g02931 Csa-Chr1:25716837 0 transposed
Csa05g02306 Csa-Chr5:25562986 Csa01g02931 Csa-Chr1:25716837 1.33E-45 transposed
Csa01g02931 Csa-Chr1:25716837 Csa07g02390 Csa-Chr7:21999971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77845 PF07714 PK_Tyr_Ser-Thr 5.40E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02931 - - csv:101218980 2026.14