Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02951 ATGGAGAATCATCAGGAGGTTGAAGGTGAGGAGGATGATGATATGGGACCCACCACCGTGGAGGAAGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTTGCTGCAGCCAAACAGTATATTGAGAATCATTACAAGGCTCAAAGAAAGCACATTCAAGAACGCAAAGAGAGGCGCTCCGTGCTTGAAAGGAGGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGGACAGAGACTCAATACATTCGGCTGAAAAGGCATAAAATTTGTGTTGAGGATTTCTACCTTTTGACAATTATTGGGCGAGGTGCTTTCGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGGAACATATATGCCATGAAGAAGCTGAGAAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCAAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCCGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTGGCCAGATTTTATATCGCCCAAAGTGTTTTGGCTATAGAGTCAATTCACATCCATAACTACATTCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTATCTGCTATAAATGAACATGAAGTCCTTGATGATGAAAACTTGAACGACACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGCGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACAGTCGGCACTCCAGATTACATAGCTCCTGAAGTATTGTTAAAAAAGGGATACGGTGTGGAATGCGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTGACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGTCGAGAGTAGGCTCGGTTCTGGAGGTGTAGACCAAATCAAGACACATCCTTGGTTCAAAGATACCGAGTGGGAGAAACTCTATGACATGGATGCAGCGTTTAAGCCCGAGGTCAATGGGGAACTCGATACACAAAACTTTATGCAATTCGATGAGGTTGATTCACCGCCAACTAGATCTGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCCGTAAAAGGGCTACGCCATTCATTTGATGTGAAGTCAAACACTGCCCCTATTCGAACGTCGTCTGTTGACTCAACTAAAAGTGACTCGGCATTGGATAACTACTCAACAGATGACAGGGAAGTCATATTGGCATCATCAATGGATGCTTTGTCACAGTAA 1602 42.57 MENHQEVEGEEDDDMGPTTVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQRKHIQERKERRSVLERRLASSDVSEEEQINLLKDLERTETQYIRLKRHKICVEDFYLLTIIGRGAFGEVRLCREKKTGNIYAMKKLRKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHIHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINEHEVLDDENLNDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDVESRLGSGGVDQIKTHPWFKDTEWEKLYDMDAAFKPEVNGELDTQNFMQFDEVDSPPTRSGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLRHSFDVKSNTAPIRTSSVDSTKSDSALDNYSTDDREVILASSMDALSQ* 534
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 25888812 25898517 + CsaV3_1G040670.1 Csa01g02951 517448
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02951 533 Gene3D Phosphorylase Kinase; domain 1 432 442 - -
Csa01g02951 533 Gene3D Phosphorylase Kinase; domain 1 104 189 - -
Csa01g02951 533 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa01g02951 533 SMART pkinase_C_6 414 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa01g02951 533 CDD STKc_NDR_like 104 477 - -
Csa01g02951 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 516 - -
Csa01g02951 533 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Csa01g02951 533 SMART serkin_6 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02951 533 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g02951 533 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 18 516 - -
Csa01g02951 533 Gene3D Transferase(Phosphotransferase) domain 1 190 255 - -
Csa01g02951 533 Gene3D Transferase(Phosphotransferase) domain 1 312 431 - -
Csa01g02951 533 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02951 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Csa01g02951 533 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g02951 533 Pfam Protein kinase domain 109 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02951 533 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02951 533 SUPERFAMILY Protein kinase-like (PK-like) 88 463 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02951 Csa-Chr1:25888812 Csa06g03876 Csa-Chr6:30657025 0 dispersed
Csa02g01055 Csa-Chr2:10236107 Csa01g02951 Csa-Chr1:25888812 0 transposed
Csa07g01616 Csa-Chr7:16674560 Csa01g02951 Csa-Chr1:25888812 0 transposed
Csa01g02951 Csa-Chr1:25888812 Csa04g02559 Csa-Chr4:25208589 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77846 PF00069 Pkinase 7.00E-42 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02951 K08790 - csv:101208238 1072.0