Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02951 | ATGGAGAATCATCAGGAGGTTGAAGGTGAGGAGGATGATGATATGGGACCCACCACCGTGGAGGAAGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTTGCTGCAGCCAAACAGTATATTGAGAATCATTACAAGGCTCAAAGAAAGCACATTCAAGAACGCAAAGAGAGGCGCTCCGTGCTTGAAAGGAGGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGGACAGAGACTCAATACATTCGGCTGAAAAGGCATAAAATTTGTGTTGAGGATTTCTACCTTTTGACAATTATTGGGCGAGGTGCTTTCGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGGAACATATATGCCATGAAGAAGCTGAGAAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCAAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCCGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTGGCCAGATTTTATATCGCCCAAAGTGTTTTGGCTATAGAGTCAATTCACATCCATAACTACATTCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTATCTGCTATAAATGAACATGAAGTCCTTGATGATGAAAACTTGAACGACACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGCGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACAGTCGGCACTCCAGATTACATAGCTCCTGAAGTATTGTTAAAAAAGGGATACGGTGTGGAATGCGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTGACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGTCGAGAGTAGGCTCGGTTCTGGAGGTGTAGACCAAATCAAGACACATCCTTGGTTCAAAGATACCGAGTGGGAGAAACTCTATGACATGGATGCAGCGTTTAAGCCCGAGGTCAATGGGGAACTCGATACACAAAACTTTATGCAATTCGATGAGGTTGATTCACCGCCAACTAGATCTGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCCGTAAAAGGGCTACGCCATTCATTTGATGTGAAGTCAAACACTGCCCCTATTCGAACGTCGTCTGTTGACTCAACTAAAAGTGACTCGGCATTGGATAACTACTCAACAGATGACAGGGAAGTCATATTGGCATCATCAATGGATGCTTTGTCACAGTAA | 1602 | 42.57 | MENHQEVEGEEDDDMGPTTVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQRKHIQERKERRSVLERRLASSDVSEEEQINLLKDLERTETQYIRLKRHKICVEDFYLLTIIGRGAFGEVRLCREKKTGNIYAMKKLRKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHIHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINEHEVLDDENLNDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDVESRLGSGGVDQIKTHPWFKDTEWEKLYDMDAAFKPEVNGELDTQNFMQFDEVDSPPTRSGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLRHSFDVKSNTAPIRTSSVDSTKSDSALDNYSTDDREVILASSMDALSQ* | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 25888812 | 25898517 | + | CsaV3_1G040670.1 | Csa01g02951 | 517448 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02951 | 533 | Gene3D | Phosphorylase Kinase; domain 1 | 432 | 442 | - | - | |
Csa01g02951 | 533 | Gene3D | Phosphorylase Kinase; domain 1 | 104 | 189 | - | - | |
Csa01g02951 | 533 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 414 | 486 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | SMART | pkinase_C_6 | 414 | 478 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | CDD | STKc_NDR_like | 104 | 477 | - | - | |
Csa01g02951 | 533 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 18 | 516 | - | - | |
Csa01g02951 | 533 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
Csa01g02951 | 533 | SMART | serkin_6 | 106 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa01g02951 | 533 | PANTHER | AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN | 18 | 516 | - | - | |
Csa01g02951 | 533 | Gene3D | Transferase(Phosphotransferase) domain 1 | 190 | 255 | - | - | |
Csa01g02951 | 533 | Gene3D | Transferase(Phosphotransferase) domain 1 | 312 | 431 | - | - | |
Csa01g02951 | 533 | ProSiteProfiles | Protein kinase domain profile. | 106 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g02951 | 533 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa01g02951 | 533 | Pfam | Protein kinase domain | 109 | 255 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | Pfam | Protein kinase domain | 306 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02951 | 533 | SUPERFAMILY | Protein kinase-like (PK-like) | 88 | 463 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02951 | Csa-Chr1:25888812 | Csa06g03876 | Csa-Chr6:30657025 | 0 | dispersed | |
Csa02g01055 | Csa-Chr2:10236107 | Csa01g02951 | Csa-Chr1:25888812 | 0 | transposed | |
Csa07g01616 | Csa-Chr7:16674560 | Csa01g02951 | Csa-Chr1:25888812 | 0 | transposed | |
Csa01g02951 | Csa-Chr1:25888812 | Csa04g02559 | Csa-Chr4:25208589 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77846 | PF00069 | Pkinase | 7.00E-42 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02951 | K08790 | - | csv:101208238 | 1072.0 |