Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02954 ATGAGGAAAGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAATCTTCCTAAAGAAGACCAATCCATAGCGACGTTCCTAACGCAGAGTGGCACGTTTAAAGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGTACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATGTTGTTGTCTGTTACCAGTCTTTCTATGATAATGGATCAATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTAAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTACTGAAGGGGTTGTCTTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAACACATATGAAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCCCCAGAGAGAATTGTGGGAGAGGGATATGACAATAAAAGTGACATTTGGAGCTTGGGTCTGATATTACTTGAGTGTGCAACCGGAAAGTTTCCTTATTCTCCACCCGGGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTGAATTCTGTTCATTTATTTCTGCATGTGTGCAAACAGACCCAAAGAATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATAAGGATATTGATCTATCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1068 40.07 MRKGGFSNNLNLKLNLPKEDQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYVVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIEEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMENTYEEANTFVGTYNYMSPERIVGEGYDNKSDIWSLGLILLECATGKFPYSPPGQDGGWVNFYELMEAIVEGEPPSAPADQFTPEFCSFISACVQTDPKNRLSARELLEHPFIKMYEDKDIDLSSYFNDAGSPLATF* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25913871 25917724 - CsaV3_1G040690.1 Csa01g02954 517451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02954 355 CDD PKc_MAPKK_plant_like 69 335 - -
Csa01g02954 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Csa01g02954 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Csa01g02954 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672|GO:0006468
Csa01g02954 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672|GO:0006468
Csa01g02954 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Csa01g02954 355 PANTHER MAP KINASE KINASE 9 354 - -
Csa01g02954 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02954 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02954 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Csa01g02954 355 SUPERFAMILY Protein kinase-like (PK-like) 55 336 IPR011009 -
Csa01g02954 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 354 - -
Csa01g02954 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Csa01g02954 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02954 Csa02g00036 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02954 Csa-Chr1:25913871 Csa03g02812 Csa-Chr3:26953475 5.47E-56 dispersed
Csa02g00081 Csa-Chr2:576984 Csa01g02954 Csa-Chr1:25913871 1.96E-24 dispersed
Csa02g00082 Csa-Chr2:578525 Csa01g02954 Csa-Chr1:25913871 1.34E-121 transposed
Csa03g03971 Csa-Chr3:34710986 Csa01g02954 Csa-Chr1:25913871 3.20E-78 transposed
Csa01g02954 Csa-Chr1:25913871 Csa02g00036 Csa-Chr2:320884 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77847 PF00069 Pkinase 3.00E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02954 K20603 - csv:101204545 712.22