Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02957 ATGAGTGGACCAGTTAACATCATTGTAGGTTCGCATGTCTGGATCGAAGATCCAAAACTAGCTTGGATTGACGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCATGTTAGGACTACCAATGGGAAAACAGTTGTTGCCAATATATCAAAGATATTCCCCAAGGATACCGAAGCACCTGCTGCAGGTGTCGATGACATGACAAAGCTGTCATACTTGCATGAGCCTGGAGTTCTGAGCAACTTGGCGACCAGATATGAACTCAACGAAATATATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGGCTACCTCATCTTTATGATACTCACATGATGGAGCAATACAAAGGAACTGGATTTGGAGAACTGAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATACAGAGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACCGAGACCACGAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGGTCTGGAGTGGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCTGTTCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAACAACAATTCAAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTCCGAACTTATTTGCTTGAAAGATCTCGAGTATGTCAGATCTCAGATCCTGAGAGAAATTATCATTGCTTTTACCTTCTCTGTGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAGTTAGCAGACCCTAAATCATTCCACTACCTAAATCAATCTAAATGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAAGCAATTTTTAGGGTTGTAGCTGCAATTTTACATCTTGGAAATATTGAATTTGCAAAGGGAGAGGAGATAGATTCTTCAGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACTGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAAGATGCACTGATTCAACGTGTTATGGTAACGCCAGAAGAGGTTATAACTCGAACTCTTGATCCTGTGGCTGCTTTGGGTAGTAGGGATGCCTTGGCTAAAACGATTTATTCACGACTCTTTGATTGGCTTGTGGAGAAGATCAACAATTCAATTGGGCAAGACCCAAATTCTAAATCATTGATTGGAGTTTTGGATATTTATGGATTTGAGAGTTTTAAATTCAACAGTTTTGAACAGTTCTGCATCAATTTCACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGCAAATCAATTGGAGTTATATTGAGTTTGTTGACAACCAGGACGTGTTGGATCTGATTGAAAAGAAACCGGGAGGAATTATTGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCTACACACGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAGCAACAAGCGCTTCATTAAGCCTAAGCTATCGCGTACTAGTTTTACAATATCTCATTATGCTGGGGAGGTGACTTATTTGGCAGATCTATTTTTGGACAAAAACAAAGACTACGTGGTAGCAGAACATCAGGCCCTCTTAACAACTTCAAAATGCTCCTTTGCGAGAGCTTTATTTCCTCCTCAACCAGATGAAACATCAAAATCCTCAAAATTTTCTTCCATTGGTTCACGTTTTAAATTACAACTTCAATCCTTAATGGAAACCTTAAATTCAACAGAACCTCACTACATCAGATGTGTAAAGCCAAATAATGTGCTCAAGCCTGCTATTTTTGAAAATTCAAACGTTATCCAGCAATTACGTTGTGGTGGTGTCCTCGAAGCAATTAGGATCAGCTGTGCTGGATATCCAACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTCTGGATGGAAACTATGATGACAAGGTAGCCTGCCAGATGATCCTGGATAAAATGGGTCTGAAAGGTTATCAGATTGGTAAGACAAAAATATTCCTGAGGGCTGGGCAGATGGCTTCTCTGGATGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTAGAACGTTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTTCTCGAGGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGACGGGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGAGATATATTGCCAGGAAATCATACTTAGATTTGCTCTCATCTGCAATCAAATTGCAAACAGGGTTAAGGGCAATGAAGGCTCGTGATGAATTCAGATTCAGAAAGCGTACCAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACATGGCGCATTCTTACTATACGAGACTCCAAAAAGCTGCATTATACACACAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAAGAAAACTGAAAATGGCTGCAAGGGAAACTGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTCACATGGCGCTTACAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATTCTTTACACAACATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTTGTCGAGGATACTGAAAAAATCAATTCCTTAATGGCTGAGGTGGAAAGTCTGAAGGCTTCGCTGCTGTCAGAGAAAACGTCAGCTGAAGAAGCTAGAAAAGCTTGTACTGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGACTTCAAGACACAGACCAGAAGGTGGATCAGCTTCAGGAGTCAGTCCAGAGGCTTGAAGAGAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAACAAGCCTTGACGATGTCGCCAACAGGAAAAGCTTTATCTGCAAGACCCAAGTCAATGATTATTCAGAGGACACCAGAGAACGGAAATATTCCACATGGAGAGGCCAAAGTATCATTGGATACAACTCTTGCATTATCAACTGTACGTGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGACCTGCTAGTGAAATGCATATCTCAAGATTTGGGATTTTCTGGAGGCAAACCAGTTGCTGCTTGTGTCATCTATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACTGGCATATTTGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCCGGACAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACTTTATTGTTGCTGCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCATCCCCACAAAGTGGTGGACTATCGTTTCTTAATGGTCGGGGGCTTGGTAGATTGGACGATTTTCGGCAGGTTGAGGCAAAGTATCCAGCACTGTTGTTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTGAAGAAAGAGATCTCCCCCTTACTGGGACTGTGTATTCAGGCTCCTCGGACATCCCGTGCAAGCTTAGTGAAAGGACGCTCCCAAGCAAACGCCATGGCTCAGCAAGCCTTGATTGCACATTGGCAAAGCATTGTGAAAAGCTTAAACAATTATTTGAAGATCATGAAAGCAAACTATGTTCCTCCATTCTTGGTCCGCAAAATTTTCACTCAGATATTCTCATTTATTAATGTTCAACTATTTAACAGCCTTCTTTTGCGACGTGAGTGTTGTTCATTCAGCAATGGCGAGTATGTGAAAGCTGGCTTGTCTGAATTGGAACAGTGGTGTTCTGGAGCAACCGAGGAATATGCAGGGTCTGCCTGGGATGAGTTAAAGCATATTAGGCAGGCTGTTGGATTCCTTGTTATTCATCAAAAGCCCAAAAAGACATTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACGCATAGTGTATCTTCAGAAGTTATTTCGAGTATGCGAATTTTGATGACTGAAGACTCCAACAATGCTATCAGCTCATTCCTTTTAGATGATGACTCTAGTATACCATTTTCTGTGGACGATATCTCCAAATCCATGAAACAAGTAGATGTAACAGATATAGATCCTCCACCGCTGATACGAGAAAACTCTGGGTTTGGGTTTTTGCTTCAACGTGCAGAGTAG 4590 41.37 MSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRTTNGKTVVANISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGTGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEEREKYKLADPKSFHYLNQSKCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTTSKCSFARALFPPQPDETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKSYLDLLSSAIKLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHMAHSYYTRLQKAALYTQCGWRRRVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDSLHNMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKASLLSEKTSAEEARKACTDAEAKNVELTKRLQDTDQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSLDTTLALSTVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTGIFDRIIQTIASSIEVPDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSGGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLNNYLKIMKANYVPPFLVRKIFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPPLIRENSGFGFLLQRAE* 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25937664 25954413 + CsaV3_1G040730.1 Csa01g02957 517454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02957 1529 SMART DIL_2 1348 1455 IPR002710 -
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Csa01g02957 1529 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Csa01g02957 1529 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Csa01g02957 1529 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Csa01g02957 1529 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Csa01g02957 1529 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 SMART iq_5 830 852 IPR000048 GO:0005515
Csa01g02957 1529 SMART iq_5 782 804 IPR000048 GO:0005515
Csa01g02957 1529 SMART iq_5 734 756 IPR000048 GO:0005515
Csa01g02957 1529 SMART iq_5 757 779 IPR000048 GO:0005515
Csa01g02957 1529 SMART iq_5 853 875 IPR000048 GO:0005515
Csa01g02957 1529 SMART iq_5 805 827 IPR000048 GO:0005515
Csa01g02957 1529 CDD MYSc_Myo11 76 720 IPR036018 -
Csa01g02957 1529 Coils Coil 877 957 - -
Csa01g02957 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Csa01g02957 1529 Gene3D Kinesin motor domain 65 662 IPR036961 -
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Csa01g02957 1529 ProSiteProfiles Dilute domain profile. 1162 1473 IPR002710 -
Csa01g02957 1529 Gene3D - 439 623 - -
Csa01g02957 1529 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 Gene3D - 833 882 - -
Csa01g02957 1529 Gene3D - 785 832 - -
Csa01g02957 1529 Gene3D - 733 784 - -
Csa01g02957 1529 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 735 761 IPR000048 GO:0005515
Csa01g02957 1529 Coils Coil 996 1051 - -
Csa01g02957 1529 Gene3D - 667 730 - -
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Csa01g02957 1529 Pfam Myosin N-terminal SH3-like domain 9 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 PANTHER MYOSIN-5 6 1525 - -
Csa01g02957 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Csa01g02957 1529 CDD MyosinXI_CBD 1113 1495 IPR037975 GO:0007015
Csa01g02957 1529 PANTHER MYOSIN 6 1525 - -
Csa01g02957 1529 Pfam DIL domain 1349 1452 IPR002710 -
Csa01g02957 1529 Gene3D - 252 310 - -
Csa01g02957 1529 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Csa01g02957 1529 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa01g02957 1529 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02957 Csa-Chr1:25937664 Csa02g00286 Csa-Chr2:1957017 0 dispersed
Csa01g02957 Csa-Chr1:25937664 Csa06g00724 Csa-Chr6:5908642 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02957 K10357 - csv:101204300 2960.63