Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02959 ATGGCCAACTCTCAATTTCTCTGCTCTTCAGCTCGCTCCAAAACTGGTTTTGTTCCTCTATCAAAATCGGTTTCCTCCGATTCGACCTCCGACCATTGGGTCAAAGCTGCCAATGCTCTCAGCCAGACCCATTTTGAAGAGGTTTGTCGCATGTTATCGGAGTTTCAAGAGGCTCAAACTGTTGATGTTGAAGGCACCACGCTTACTGTCGCTCAGGTAGCCACCATTGCTCGTCGAAGTGATGTCAAAGTCATCTTGAATGAATCTGTGGCACATGATCGTGTGGCCGAAAGTGCAAAATGGGTTGCTGAGAAAGTGTCGAGCGGAATAGATATATATGGAGTTACCACGGGCTTTGGTGCCACCTCCCATCTCCGTACGACCAAAATATCCGACCTCCAAACAGAGCTTATTAGATTCCTCAATGCTGGTGTCATTGGAAAGGATAATCTTCCGTCTTGCTACTCGAAGGTGGCGATGCTTGTTAGAACAAACACATTGATGCAAGGCTACTCAGGGATTCGTTGGGAAATTCTGGAAGCTCTAGTGAAGTTGATGAATGAGAATTTGATCCCTAAGTTGCCTTTGAGAGGGACGATTACTGCTTCTGGAGATCTTGTTCCTCTGTCTTATATTGCTGGCGTTGTCACTGGAAGGCATAATTCCAAGGTTACTACCATTGAAGGTGATGAGATTACTGCCATTGAAGCTCTCAAACGAGCTGGAGTTGCAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTTTAGTCAATGGAACTGCTGTTGGGTCAGCTGTTGCTGCTACAGTTTGCTACGACGCCAACATTCTGGCTCTTTTAGCCAGTGTTCTCTCTGCTTTGTTTTGTGAAGCCATGCTTGGGAAGCCAGAATTTACAGACCCGTTAACCCATAAGCTTAAGCACCACCCCGGTCAGATTGAATCCGCTGCAGTCATGGAGTTCCTCTTGAACCAAAGCGATTTCATGAAAGAAGCAAAAATCTGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGTTATGCACTTCGAACCTCTCCACAATGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACTCATTCGATCGAAAGGGAAATTAACTCTGTGAATGATAACCCATTAATTGATGTTAGTCGAGATGTAGCTGTACATGGAGGAAACTTTCAGGGGACCCCAATTGGAGTTTCCATGGATAATCTTCGAATCGCCATCGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCTGAACTCGTATGTCATCATTACAATAATGGATTACCATCTAATTTGAGCGGCGGACCAAATCCTAGCTTGGACTACGGCTTCAAAGGGGCGGAAATCGCCATGGCTGCTTATTGCTCTGAGCTCCAATACTTAGCAAATCCTGTCACTACCCATGTCCAAAGTGCAGAACAACACAATCAAGATGTAAACTCTCTAGGTTTAATCTCAGCCAGAAAATCCGCTGAAGCCATTGAAATACTAAAGCTCATGTCTGCTACATACATGGTAGCGCTTTGCCAAGCAATCGATTTAAGACAATTCGAAGAAAATATGAGGGAGGTAGTGAAAAATGCTCTTCTACAAACCATCAGAAAAACACTCTACATGGCAGAGTATGGATCACTTCTCGAATCACGATTTTGTGAGAAAGATCTCTTGCAAGTAATCGAGCGCGAGGAAGTCTTCTCCTACATCGACGATCCCACCAACACATCCTACACCCTAATCCCAAAATTACTAGAAGTTCTAGTTGAAAAAGCATTGAAAGGAGTTGCAACAGGCAAAACAGATAACGGAAACGAAACAGGGATTGCCATATTCAAGCAAATTCCAGAGTTTCTCGAGGAATTAAAGGCGAAATTGGAAAAAGATGTTGAAAATGCAAGAGGGAGATTCGAGAATGGTGATTTCGAAATTGAAAATAGAATCAAGAAATGCAGCACTTACCCAATCTACCGATTCGTGAGAAATGAAGTGGGGACTCAACTGTTGAGTGGAGCAAAGAAGGTTAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAGGCCATTGATGAAGGGAAGCTTGGAAATATTTTGATGGAGTGTTTGAAGAATTAG 2136 43.87 MANSQFLCSSARSKTGFVPLSKSVSSDSTSDHWVKAANALSQTHFEEVCRMLSEFQEAQTVDVEGTTLTVAQVATIARRSDVKVILNESVAHDRVAESAKWVAEKVSSGIDIYGVTTGFGATSHLRTTKISDLQTELIRFLNAGVIGKDNLPSCYSKVAMLVRTNTLMQGYSGIRWEILEALVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVVTGRHNSKVTTIEGDEITAIEALKRAGVAGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLASVLSALFCEAMLGKPEFTDPLTHKLKHHPGQIESAAVMEFLLNQSDFMKEAKICNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDVSRDVAVHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCHHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQFEENMREVVKNALLQTIRKTLYMAEYGSLLESRFCEKDLLQVIEREEVFSYIDDPTNTSYTLIPKLLEVLVEKALKGVATGKTDNGNETGIAIFKQIPEFLEELKAKLEKDVENARGRFENGDFEIENRIKKCSTYPIYRFVRNEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNILMECLKN* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25961521 25964506 - CsaV3_1G040750.1 Csa01g02959 517456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02959 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824
Csa01g02959 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Csa01g02959 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa01g02959 711 PANTHER HISTIDINE AMMONIA-LYASE 35 710 IPR001106 -
Csa01g02959 711 Gene3D - 21 261 IPR024083 -
Csa01g02959 711 CDD PAL-HAL 66 525 IPR001106 -
Csa01g02959 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Csa01g02959 711 PANTHER PHENYLALANINE AMMONIA-LYASE 35 710 - -
Csa01g02959 711 Gene3D - 528 654 IPR023144 -
Csa01g02959 711 Pfam Aromatic amino acid lyase 68 544 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02959 Csa-Chr1:25961521 Csa04g00231 Csa-Chr4:1382724 0 dispersed
Csa01g02959 Csa-Chr1:25961521 Csa06g02580 Csa-Chr6:22800389 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02959 K10775 - csv:101205510 1353.19