Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02964 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTAAGGATTTTGGAAGGTGAAGAAGGAGTTCGTGAAAGTAGTAAAGATCTTAATAAACCGTCTGTTGGTTCTTTTCCTGATTTTGACCTAAAAGAAACTCGGAGTTTTAGGTGCACGATTCCACAATCCGTGGTTGGGAGTTCTCCTTCACACGAGATTTCCAGAATGACTCCTCATAAACCTCCAAAAATTCCAGGCGAAACGGTGACACGGCGTGCATCATTTGCTTGTTCGTCGTTTACGAAGCCAAAATCGAGGCTAATAGAGCCTCCTTGTCCTGATGGTGCAAGTTTAGCAGAAGAAAAGGAGTTAGCAAAATCTACATTGTATAGCTCTTCTAAGGTGGACTCTCCAGCTAAGATAACCACTGTGACTAGTCCTAAAGAAGCTTTGAAGGCAGCCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGGAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACTGCAGAACTGAAAGTGAAAGAAAAATCTGGGAAGAGATTGAAGAAAACAGTTATAGTGGAATGGATTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACTATAGAGACGTTGGTGACCAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTTGTATTAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTCAAAAGAAAGGTTCTTTATTTTGTTTATGGGCTGAGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTAGTTCTTCTAGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGGAAGGCAACAAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTAATTGGAGCAGGACTATGGCTGGTTAAAACTTTGTTGGTGAAGATACTCGCTGCTTCTTTTCAGTGCACTAGATTCTTTGATCGGATTCAAGAATCGATCTTCCATCAATATATACTACGCATTTTATCAGGACCTCCGCTCATGGAAATGGCTGAGAGGGTCGGGAGAGCGGCAAGCACAGGACAGTTGAGTTTCAAGCATTTGAAGAAAGAAAGTGATGATGGGAATGAAGGGAAGGAAGAGGTTATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGGGTTCAGGATTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGAAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCCGAAACGTTGCAAAACCGGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAAGAGGAAATTGATAATGTGCTGCCGTTGTTTGAAGGAGGAGCTGAAACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTCGAACGCAAGTCGTTAGCTCACTCATTGAATGACACCAAAACTGCCATAGAGGAGCTAAACAAGCTTTCATCTGCAGTTATACTAATTGTGATCATCATTGAATGGCTACTTCTGATGGGTTTCTTAACTACGCAAGTACTCGTTTTCATTTCATCACAGATTCTATTGGTGGTTTTCATGTTCGGTAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTTGGGGATCGTTGTGTCGTAGATGGTGTCCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATCTTCTTGAGATATGATAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATTAGTAACTACTACAGGAGCCCCGAAATGAGCGACTCGATCGATTTTTCCGTTGACTTCTCCACCTCAATAGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACTTAGAAAGCAAACCGCAGTTCTGGCGACCGAACTACAGTGTCGTAGTGAAAGAAATCGAGAATGTCAACAAAATGAAACTAGCTCTATGTGTTAATCACACCATAAACTTTCAGAACTACGGTGACAAGAGCAATCGTAGATCGGATTTGGTGTTGGAGCTGAAGAAAATTTTCGAAGAACTCGGTATCAAATACCATCTGTTGCCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCACCATCTCAAAGATGA 2289 40.41 MADKKGMEQLVLRILEGEEGVRESSKDLNKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSHEISRMTPHKPPKIPGETVTRRASFACSSFTKPKSRLIEPPCPDGASLAEEKELAKSTLYSSSKVDSPAKITTVTSPKEALKAAPITPKTPLIGTTGNEEEDDEEVYRTAELKVKEKSGKRLKKTVIVEWIAFLCLTGCLIASLTIETLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKEGNKILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFKHLKKESDDGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRGSGLSTISNTIENFKEEEVEKKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGGAETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLSSAVILIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVNKMKLALCVNHTINFQNYGDKSNRRSDLVLELKKIFEELGIKYHLLPQEVQLNYVSSAAPSQR* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25997051 26000565 + CsaV3_1G040800.1 Csa01g02964 517461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02964 762 PIRSF Memb_At2g17000 16 762 IPR016688 -
Csa01g02964 762 MobiDBLite consensus disorder prediction 53 78 - -
Csa01g02964 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 757 IPR016688 -
Csa01g02964 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 757 - -
Csa01g02964 762 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
Csa01g02964 762 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Csa01g02964 762 Gene3D - 595 644 IPR023408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02964 Csa-Chr1:25997051 Csa04g02574 Csa-Chr4:25300087 6.41E-116 dispersed
Csa02g00880 Csa-Chr2:8198351 Csa01g02964 Csa-Chr1:25997051 0 transposed
Csa06g01060 Csa-Chr6:8687901 Csa01g02964 Csa-Chr1:25997051 8.72E-163 transposed
Csa07g00130 Csa-Chr7:1148400 Csa01g02964 Csa-Chr1:25997051 0 transposed
Csa01g02964 Csa-Chr1:25997051 Csa04g02572 Csa-Chr4:25284708 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02964 K22048 - csv:101209209 1450.65