Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02967 ATGGAATACTTTGTGTTCTATTGTTTGGCACTTTGTTTGGTTGTTTTTGGAGTGGCAAAAGCTTTTCATTCCATTTGGTGGAAACCCATATCAGTGGAAAGACATTTGAAAAGACAAGGAATAAGAGGGAATGCTTACAAGCCTTTGGTTGGTGATGTCAAAGAGTATGTGAGGATGATGACTGAAGCATGGTCCACTCCTATGAATCTAGATCATCAGATTGTTCAACGTGTCGACCCGTTCACAGCGGTGAACGCTGAAAAATATGGAAAGATATCTATGTGTTGGTTTGGCACAAGTCCGAGATTGATAGTGAAGGACCCTGAGATGATGAAAGAAGTACTAACGAACAAGGTGGGTAGCTTTGAGAAGCCACCATTGAGTCCACTTATTTTGACGCTAACGAGAGGATTAACTACTCTTAAAGGAAATGAATGGGCTAAACACAAGAGGATCATCAATCCTGCTTTTCATCTTGAAAGGCTCAAGGGAATGATGGCAGCCTTTAATATAAGTTGTAGCAACATGATAGAGGAGTGGAAGGAAAAGGCTGCTAATCAAGACAGTGTTGAAGTGGATGTGTGGCCTGAACTTCAGAGACTAACTGGAGATGTTATATCAAGGGCTGCCTTTGGCTCCAACTTTGAAGAAGGGAAGAAGATCTTCGAACATCTCAAACAACTCACTCTTCTTACTCTAGAAGCTATGCAGACCTTGTATCTTCCTGGTTTCAGATTTATTCCAACGGCTAAGAATAGGAAGAGAGAGAGACTGAACAAGGAGATCAAAACCATGATTAGGAGTTTAATTTTAAGAAAAGAAAGTTCCATGAGCAACCAGGAAGATAATGCTGATGACCTGTTAAGCCTGCTGTTGCAGTCAAAGAAGAAAGAAAACCAACAAGAAGGTGATGGACTGACAATTGATGAAGTGATGGAGGAGTGCAAGCAGTTCTACCTTGCAGGGCAGGAAACAACAGCAAGCTTGTTAATATGGACAGTCATTGTCTTGGCCATGCACTCAGACTGGCAAGAAAAGGCTAGGCAGGAGGTCTTGCAATTTTGTGGAAAGAATGAACCAACTTTTGAATCTTTAAACCACTTCAAGATTGTTACCATGATACTCTATGAAGTCCTGAGGTTATACCCACCAGTTATTGGTCAATATCAACATACTTATGCAGAAATAAAGATAGGTGAAGTTTTAATACCAGCTGGGATTGATGTTACTTTACCTACACTGCTTATTCACCACGATCCTGAGTATTGGGGAGAAGATGCAGAACAATTCAAACCAGAGAGATTCGCTTCAGGAGTTTCAAAGGCAAGCAAAGATCAGTTGGCTTTCTTTCCCTTTGGCTGGGGACCTAGGACTTGCATTGGACAAAACTTTGCCATGTTAGAAGCTAAGGTAGCATTGGCTATGATTCTACAGAATTTCTCTTTTCAGCTTTCACCTTCTTATGCACATGCTCCCCATACTGTCATGACTCTTCAACCACAGCATGGAGCCCAGCTGATACTTCACCAACTATAG 1536 41.41 MEYFVFYCLALCLVVFGVAKAFHSIWWKPISVERHLKRQGIRGNAYKPLVGDVKEYVRMMTEAWSTPMNLDHQIVQRVDPFTAVNAEKYGKISMCWFGTSPRLIVKDPEMMKEVLTNKVGSFEKPPLSPLILTLTRGLTTLKGNEWAKHKRIINPAFHLERLKGMMAAFNISCSNMIEEWKEKAANQDSVEVDVWPELQRLTGDVISRAAFGSNFEEGKKIFEHLKQLTLLTLEAMQTLYLPGFRFIPTAKNRKRERLNKEIKTMIRSLILRKESSMSNQEDNADDLLSLLLQSKKKENQQEGDGLTIDEVMEECKQFYLAGQETTASLLIWTVIVLAMHSDWQEKARQEVLQFCGKNEPTFESLNHFKIVTMILYEVLRLYPPVIGQYQHTYAEIKIGEVLIPAGIDVTLPTLLIHHDPEYWGEDAEQFKPERFASGVSKASKDQLAFFPFGWGPRTCIGQNFAMLEAKVALAMILQNFSFQLSPSYAHAPHTVMTLQPQHGAQLILHQL* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26019911 26023898 + CsaV3_1G040830.1 Csa01g02967 517464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02967 511 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 509 - -
Csa01g02967 511 SUPERFAMILY Cytochrome P450 82 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PANTHER CYTOCHROME P450 72A15-LIKE 10 509 - -
Csa01g02967 511 Pfam Cytochrome P450 83 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Csa01g02967 511 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 86 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02967 511 Gene3D Cytochrome P450 27 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02967 Csa-Chr1:26019911 Csa04g02242 Csa-Chr4:23069281 9.50E-176 dispersed
Csa05g02527 Csa-Chr5:26782637 Csa01g02967 Csa-Chr1:26019911 9.03E-126 dispersed
Csa01g02967 Csa-Chr1:26019911 Csa02g00167 Csa-Chr2:1164961 4.88E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02967 - - csv:101206868 1016.53