Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g02970 | ATGAGCGCCAGAAGTATGTTTCCCTTCACATCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGAACTTCTCTTCAGTATTAAAAGAAGTGCTTTGGATTCTCCTTTCACTTCTAAGCTCTTCCCACACCATCCTCAACCTGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAGCCAGGGAGGTGTAGGAGAACTGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATACTGTGAGAGACACATGCATAGAGGAAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACATAAACCACCTCTCAAATCCAACATTTTCTTCCTTAAACAGCAACTCATCCTTACTCTCCTATCGCCCCTTCCCGGCTCATCAAATATCTTCAACTCCTAATAATGGGAATGGTATATCAATGAAAGACACCAATACCCTCTTGCTTCTTGAACCTGGTTCTTATTCCGACAAAAACCCAGATTACAGAAGTAGGTACACTTGTGGGCTAAAAGAGGAAGTGAATGAGAAAGTTTTCTTCTCACAAGAACCTTCTGAAGCTATTGGGAGAGCTGATTTCTCTGCTTCATCCATAGCTAGTTCATTGCAACTGACACCACTAACGATGAGTTCTTCTCTATACCCAAAACAGAACAACAGCTCCTCTTTGCAGAGTGATCAATCCTCATTTTATCAGCTTCATCAGAACCTCACAGAACCTTTGAAGCAACAAAAGAGAGACGAATCGCAGAAGACTGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGACAGAGGATCATGGCTTGATTTCGCTGATAAATCATCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCCTAG | 1002 | 42.22 | MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKRSALDSPFTSKLFPHHPQPVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINHLSNPTFSSLNSNSSLLSYRPFPAHQISSTPNNGNGISMKDTNTLLLLEPGSYSDKNPDYRSRYTCGLKEEVNEKVFFSQEPSEAIGRADFSASSIASSLQLTPLTMSSSLYPKQNNSSSLQSDQSSFYQLHQNLTEPLKQQKRDESQKTVHRFFDEWPPKDRGSWLDFADKSSNTSSVSTTRLSISIPTASNDFPIFRSKNP* | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 26042761 | 26044365 | - | CsaV3_1G040860.1 | Csa01g02970 | 517467 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g02970 | 333 | Pfam | WRC | 77 | 118 | IPR014977 | - | |
| Csa01g02970 | 333 | PANTHER | - | 5 | 320 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 | |
| Csa01g02970 | 333 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Csa01g02970 | 333 | PANTHER | GROWTH-REGULATING FACTOR 6 | 5 | 320 | - | - | |
| Csa01g02970 | 333 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Csa01g02970 | 333 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
| Csa01g02970 | 333 | ProSiteProfiles | WRC domain profile. | 76 | 120 | IPR014977 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa01g02970 | Csa02g00019 | CCT | |
| Csa01g02970 | Csa02g00019 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g02970 | Csa-Chr1:26042761 | Csa02g02778 | Csa-Chr2:24171033 | 3.54E-60 | dispersed | |
| Csa03g02826 | Csa-Chr3:27030692 | Csa01g02970 | Csa-Chr1:26042761 | 1.46E-68 | transposed | |
| Csa03g03391 | Csa-Chr3:30598509 | Csa01g02970 | Csa-Chr1:26042761 | 1.89E-38 | transposed | |
| Csa01g02970 | Csa-Chr1:26042761 | Csa02g00019 | Csa-Chr2:258172 | 9.31E-108 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30817 | PF08879 | WRC | 1.10E-20 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g02970 | - | - | csv:101207344 | 670.618 |