Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02993 ATGACGATGAAGAAGAGGGTTTCATGGAGGTCATTTCTGCCACCAATCTGCGGCGGTGAGTTGCCGGCAAAGGCGACGAAGAAGGTGGCGGCGAAACAGAGTTCTTTCACTAGAATTTCTCAGCTTGATCTAAGCAATCCCAATTCTCTTCTTTCTGAAGATCTTTCCATATCTTTGGCTGGCTCTAACATTCATATGTTCACTTTGGGAGAGATTAAGGTCATGACACAAACTTTCTCCACCGGTAGTTTCATCGGAGAAGGTGGGTTCGGACCCGTGTATAAAGGATTCATCGATGATAAGCTCCGTCCCGGCCTCAAGGCTCAGCCTGTCGCCGTCAAGCTCTTGGACTTGGATGGCACTCAGGGCCACCGCGAGTGGTTGACGGAAGTGATATTTTTGGGACAACTACGAGATCCTCATTTGGTGAAATTGATTGGATATTGCTGTGAAGACGAACATAGGGTGTTGGTTTATGAGTACATGCCAAGAGGAAGCTTAGAGAACCAACTCTTTCGAAGATTTTCAGTGTCATTATCATGGTCAACAAGAATGAAAATAGCTTTAGGAGCAGCCAAGGGATTAGCCTTTCTTCATGGAGCTGAAAAACCAGTGATTTATAGAGATTTCAAAGCTTCTAACATTTTGTTAGATTCTGATTACAATGCAAAGCTTTCAGATTTTGGTTTGGCTAAAGATGGACCTGATGGAGATGATACACATGTCTCCACCCGAGTCATGGGTACGGAAGGCTACGCTGCTCCCGAATATATTATGACTGGTCATTTGACGGCAATGAGTGATGTGTACAGTTTCGGAGTAGTACTTTTGGAGTTGTTGACTGGACGACGATCGCTCGAGAAGAGTCGACCGCACCGTGAACAAAATTTGGTCGAGTATGCTCGTCCGATGTTGATGGACAACCGAAAGCTTTCTCGGATCATGGACACGAGACTGGAAGGGCAATACTCAGAGACCGGAGCAAGAAAAGCGGCAACATTGGCGTACCAATGTCTGAGCCACCGCCCAAAGCAGAGGCCAACGATGAACGAAGTGGTGAAAATCTTGGAGCCACTTAAGGACTACCAAGACATGCCCATTGGAACCTTTGTTTTCGAGATGCCGGATTCTTCTCCGGTATCATCAAACGGCCATCACAGACAAAATCACGGACACCGACGTTCTAGATCGCCGAATTCACCATTGACGGAAAATGGGGCGAGCAATGGCAACCGACGACCGACAAGCGGCGGCCGGAGACCATAG 1266 47.31 MTMKKRVSWRSFLPPICGGELPAKATKKVAAKQSSFTRISQLDLSNPNSLLSEDLSISLAGSNIHMFTLGEIKVMTQTFSTGSFIGEGGFGPVYKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHREWLTEVIFLGQLRDPHLVKLIGYCCEDEHRVLVYEYMPRGSLENQLFRRFSVSLSWSTRMKIALGAAKGLAFLHGAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPDGDDTHVSTRVMGTEGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSLEKSRPHREQNLVEYARPMLMDNRKLSRIMDTRLEGQYSETGARKAATLAYQCLSHRPKQRPTMNEVVKILEPLKDYQDMPIGTFVFEMPDSSPVSSNGHHRQNHGHRRSRSPNSPLTENGASNGNRRPTSGGRRP* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26155947 26158370 + CsaV3_1G041090.1 Csa01g02993 517490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02993 421 MobiDBLite consensus disorder prediction 373 421 - -
Csa01g02993 421 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 24 396 - -
Csa01g02993 421 Gene3D Phosphorylase Kinase; domain 1 45 161 - -
Csa01g02993 421 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02993 421 SUPERFAMILY Protein kinase-like (PK-like) 64 382 IPR011009 -
Csa01g02993 421 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Csa01g02993 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Csa01g02993 421 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Csa01g02993 421 PANTHER OS01G0588500 PROTEIN-RELATED 24 396 - -
Csa01g02993 421 MobiDBLite consensus disorder prediction 395 415 - -
Csa01g02993 421 CDD STKc_IRAK 85 359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02993 Csa02g00015 CCT
Csa01g02993 Csa02g00015 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02993 Csa-Chr1:26155947 Csa03g02987 Csa-Chr3:28476356 2.82E-155 dispersed
Csa02g00705 Csa-Chr2:5689115 Csa01g02993 Csa-Chr1:26155947 7.56E-147 transposed
Csa04g02688 Csa-Chr4:26065433 Csa01g02993 Csa-Chr1:26155947 1.20E-45 transposed
Csa05g02200 Csa-Chr5:24828871 Csa01g02993 Csa-Chr1:26155947 2.07E-22 transposed
Csa01g02993 Csa-Chr1:26155947 Csa02g00015 Csa-Chr2:233723 0 wgd
Csa01g02993 Csa-Chr1:26155947 Csa07g02351 Csa-Chr7:21752592 7.89E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77848 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02993 - - csv:101209291 840.491