Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03001 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCCCTTCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCATGCAATTAGGGATATGGTTGTGCGCGGGGCACCTGCCATTGCTATTTCAGCAGCTCTTGCTTTGGCAGCAGAAGTTAATAACTCAGCCCCTTTTAATGGGACACCCAATGATGCAGCGTCATTTATTGCAGATAAATTGGACTACTTAGTCTCGAGCCGGCCAACTGCGGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCCAGGGCAGCTGCTATTTCGTCTGAAGCCAGTAGTGTCTTCCAAGCTTTTATAGAGGCTGCTGAAGCAATGCTGGAGGATGACGTTGCTTCAAACAAAGCCATTGGGCTCTATGGAGCAAATTATATCCGTGATCAACAAAAATCATTGGAGAAGTTTTCCGTTCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCGGGGGTGTTAGAAAGGGCATACTGTACCGAGACACGGCCCTTTAATCAAGGATCTCGACTCACTGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTCATAGCTGATTCCGCTGCCGCTGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTTGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATTGTTATCGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCTCGTGGAGGTCTCGGCGAGCAAGTTGCGGCATCTGGTATCGCTGTGTGGAACCCTGCTTTTGATGTTACTCCTGCTCATCTGATTTGTGGAATCATAACAGAAAAGGGAGTCATCACGAAGGCAGGTTCCGATTCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGCAGGGCCTTCCGCATAG 1146 46.51 MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAISAALALAAEVNNSAPFNGTPNDAASFIADKLDYLVSSRPTAVNLGDAAIKLKEIVSRAAAISSEASSVFQAFIEAAEAMLEDDVASNKAIGLYGANYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLICGIITEKGVITKAGSDSFNIKEFVQKTAGPSA* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26196639 26200534 - CsaV3_1G041170.1 Csa01g03001 517498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03001 381 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 374 - -
Csa01g03001 381 Gene3D - 15 172 IPR027363 -
Csa01g03001 381 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 361 IPR037171 -
Csa01g03001 381 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Csa01g03001 381 Gene3D - 173 376 IPR042529 -
Csa01g03001 381 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 367 IPR005251 -
Csa01g03001 381 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 44 361 IPR011559 GO:0044249
Csa01g03001 381 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237
Csa01g03001 381 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03001 Csa-Chr1:26196639 Csa05g01660 Csa-Chr5:19732204 8.01E-16 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03001 K08963 - csv:101210526 709.138