Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03007 ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCACTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGTGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGGTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGA 804 53.73 MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26223514 26225960 - CsaV3_1G041230.1 Csa01g03007 517504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03007 267 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 262 - -
Csa01g03007 267 Pfam Chlorophyll A-B binding protein 69 235 IPR022796 -
Csa01g03007 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 262 IPR001344 GO:0009765|GO:0016020
Csa01g03007 267 Gene3D Chlorophyll a/b binding protein domain 70 255 - -
Csa01g03007 267 SUPERFAMILY Chlorophyll a-b binding protein 59 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01655 Csa-Chr1:12361847 Csa01g03007 Csa-Chr1:26223514 3.35E-23 dispersed
Csa01g03007 Csa-Chr1:26223514 Csa05g02208 Csa-Chr5:24869407 2.23E-102 dispersed
Csa01g03007 Csa-Chr1:26223514 Csa01g00560 Csa-Chr1:3626647 4.95E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03007 K08908 - csv:101211430 557.37