Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03015 ATGACGAAGCCCTCCTCCGCAGCCGCCGCCCTTGACACTTCCGATTCACGTTACAAGGGAGTACGCCGCCGTAAGTGGGGCAAGTGGGTTTCCGAAATCCGTCTCCCCAACAGCCGTGAACGGATCTGGTTAGGCTCTTATGATTCTGCCGAGAAAGCGGCGCGTGCATTCGACGCCGCACTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCACAGAATCCACCCGAAATCCCCGACGCTACTTTACTCTCTCGATCCGAGATTCAATCTGTCGCTGCTCAATTCGCTAACTCCGACCCAATTCCCTCCTCGGAATTCCACCGACCCACCACCACCGATTCTCCCTCTCCCTCGCTGGTTTCCGAAATGACAACCTCGGTTATTGAGTGTGATGAAAGATCGCTGTTTTTGGATCTTCACACCGCCATGGGATCGGATAACTACGGAACGGATTTCGGGTTATTTCCGGAATATAATCCATTTTATAATGAACTGTTCATAAATTCTTCCTCTTCTTCTTCAACAATTCCTTGTTATGATTATGGAGATGAGATTTTTGAAGCCACTCATCAAGATGATTCATCGTATCTTTGGAATTTCTAA 612 48.69 MTKPSSAAAALDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPQNPPEIPDATLLSRSEIQSVAAQFANSDPIPSSEFHRPTTTDSPSPSLVSEMTTSVIECDERSLFLDLHTAMGSDNYGTDFGLFPEYNPFYNELFINSSSSSSTIPCYDYGDEIFEATHQDDSSYLWNF* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26272725 26275130 - CsaV3_1G041310.1 Csa01g03015 517512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03015 203 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Csa01g03015 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 8 203 - -
Csa01g03015 203 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Csa01g03015 203 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Csa01g03015 203 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Csa01g03015 203 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Csa01g03015 203 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Csa01g03015 203 MobiDBLite consensus disorder prediction 101 122 - -
Csa01g03015 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 203 - -
Csa01g03015 203 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Csa01g03015 203 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03015 Csa-Chr1:26272725 Csa06g01994 Csa-Chr6:17955495 2.20E-43 dispersed
Csa06g00363 Csa-Chr6:2956251 Csa01g03015 Csa-Chr1:26272725 8.51E-28 dispersed
Csa01g03015 Csa-Chr1:26272725 Csa06g02954 Csa-Chr6:25584512 4.72E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30820 PF00847 AP2 8.00E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03015 - - csv:101213288 412.149