Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03016 ATGGCGGCAGCTCATTTTACTGGCTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCTTCTGTGAAATTCTCTCCTTCTGTTGCCCATGCTCGAGTTGGGGGTTTGGCCAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATTAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCGTCAACAGCTCAGACAAGACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTTAAGACTGGTGCTCAAGTAGTGTACTCTAAGTACGCTGGAACTGAATTAGAGTTTAATGGTTCAAACCATCTTATCCTGAAAGAAGATGATATAGTTGGTATACTAGAGACGGACGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGGATCAAAAGAGAAGCCGTCCATCGGAACGGTGATCGCAGTTGGTCCAGGTCATCTGGACGAAGAAGGAAAAAGGAAACCGCTAACCGTGGCAGTGGGAAACAACGTGATGTACTCGAAATATGCTGGAAATGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCATCAGACTTGATTGCAGTGCTATCTTAG 771 45.27 MAAAHFTGSLISSRNLLPSFNGLRPSSVKFSPSVAHARVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPSTAQTRPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEGSKEKPSIGTVIAVGPGHLDEEGKRKPLTVAVGNNVMYSKYAGNEFKGKDGSDYIALRASDLIAVLS* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26281460 26284202 + CsaV3_1G041320.1 Csa01g03016 517513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03016 256 ProSitePatterns Chaperonins cpn10 signature. 163 187 IPR018369 GO:0005524|GO:0006457
Csa01g03016 256 Gene3D GroES chaperonin 158 256 IPR037124 GO:0006457
Csa01g03016 256 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457
Csa01g03016 256 SUPERFAMILY GroES-like 63 156 IPR011032 -
Csa01g03016 256 PRINTS 10kDa chaperonin signature 65 80 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 PRINTS 10kDa chaperonin signature 87 108 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 PRINTS 10kDa chaperonin signature 121 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 PRINTS 10kDa chaperonin signature 142 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 ProSitePatterns Chaperonins cpn10 signature. 65 89 IPR018369 GO:0005524|GO:0006457
Csa01g03016 256 CDD cpn10 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 PIRSF Cpn21 1 256 IPR017416 GO:0006457|GO:0046914|GO:1901671
Csa01g03016 256 Pfam Chaperonin 10 Kd subunit 163 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 Pfam Chaperonin 10 Kd subunit 65 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 SMART Cpn10_2 162 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 SMART Cpn10_2 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 Hamap Co-chaperonin GroES [groES]. 162 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 SUPERFAMILY GroES-like 162 255 IPR011032 -
Csa01g03016 256 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 256 - -
Csa01g03016 256 Hamap Co-chaperonin GroES [groES]. 64 156 IPR020818 GO:0005524|GO:0006457|GO:0140662
Csa01g03016 256 CDD cpn10 163 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03016 Csa-Chr1:26281460 Csa04g01912 Csa-Chr4:18887744 8.98E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03016 K04078 - csv:101212396 495.352