Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03025 ATGGGGAGAGAACTCCAAAAGCAACCTCAGCAAGAGATGGCCTCCGCCGTGGAGCAATTGCTCGCCGTGAATCCTTACAATCCCGACATTCTCCCCGATCTCGAAAACTACGTAAACGAGCAGGTCTCGTCAGAAACGTACAGTTTAGATGCCAATCTATGCCTTCTTCGTCTCTACCAGTTTGAGCCAGAGAGAATGAGCACCCAAATTGTGGCTCGCATTCTGGTCAAGGCTCTGATGGCAATGCCAGCTCCGGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGTGTGCAAATGGAGGATCAATTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTCCGTCAATTCTGGGATGAAGCTGCCAAGAACCGTCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCAATTCAAGCTTATGCTGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCGGAGGCAATCAATATCGAGGGCCTGTCATTGGACAAATTTCTCGAGCACCAAGTTGCAAACTCTGGCTGGACTCTTGAGAAAGGTGGGAAGGGCCAACTTATTGTTATACCACCCAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCTGATAGCATTCCCTTGGATCACATTACTCGCATCTTTCCAATTCTTGGCTAA 696 46.12 MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWTLEKGGKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26376697 26380037 + CsaV3_1G041410.1 Csa01g03025 517522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03025 231 Gene3D ARM repeat; domain 1 8 125 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Csa01g03025 231 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 8 231 - -
Csa01g03025 231 Pfam CSN8/PSMD8/EIF3K family 67 194 IPR033464 -
Csa01g03025 231 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 231 IPR009374 GO:0003743|GO:0005737|GO:0005852
Csa01g03025 231 ProSiteProfiles PCI domain profile. 47 205 IPR000717 -
Csa01g03025 231 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 8 231 IPR009374 GO:0003743|GO:0005737|GO:0005852
Csa01g03025 231 SUPERFAMILY Winged helix DNA-binding domain 137 228 IPR036390 -
Csa01g03025 231 Gene3D - 128 229 IPR036388 -
Csa01g03025 231 SUPERFAMILY ARM repeat 10 135 IPR016024 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03025 K15028 - csv:101214255 460.685