Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03099 ATGATGATGATGTTCAACGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTTCAATTACGGAAGGAGATGCTGTAGCTCCACCAACTGATCCTGAAGTCGTGGTGGAAGACGATTATTCTGATGAAGAGATCGACATGGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGTGAAGCAACGACAATCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAATATATGTTGAAGATTATGGAAGTCTGTAATGCTCAAGGTTTTGTATACGGAATAATTCCTGAGAAGGGAAAACCAGTAACCGGGGCATCGGATAATCTGCGAGAGTGGTGGAAAGACAAAGTCAGATTTGATAGAAACGGACCAGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCTGGACGAAATGATGGCTGTAATTCAATCGGTCCAACCCCTCACACCTTGCAGGAACTTCAGGATACCACCTTAGGTTCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGAGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTTGGATTGCCGAAGGACCAAGGTCTTCTGCCCTACAAGAAGCCTCATGACTTGAAGAAAGCTTGGAAAGTAGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATTGCCAAGATCCGCAAGCTTGTTAGACAATCCAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAAGAGGAGATCTTGGCCCGAGAGCTTTATCCTGATTCTTGCCCGCCTTTGTCTTCCGCTGGGGGCAATGGATTGTTGGTCATTAACGATTGTAGTGAATATGATGTAGAAGGTGCTGAGGAGGAACCGAGCTTTGATGTGCAAGATCGTAAACCTGATAATCACAGCTCATTCAACTTAGGGATTGACAGAATGAGAGATCGGGTGTCCCTTCGACAACCACCTTATGCAATGAAAGGAGAGGTTACTACAAACTTGGATTTTATGCGAAAGAGGAAACCAACCAGTGATTTGAACATGATGATGGATCAGAAGATCTATACATGTGAGTTCCTCCAATGTCCTTACAGCGAACTTCGTCTTGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGCCCATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAATGAGGTCAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGTCAAATCCACCTCCGGTCAGCTCAGTTCCGTCATCTTTCGACCTGTCGACTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAGAACAACTTAAACACTGGTAACAGTGCCACCACGGAGAACCAAAATCTCCCTCAATTAAAGATTCAACCTCAACAAGACGATTACTTCCGCAATCAAGGTCTAATGATCGAGGGGAACTTCTTTGATGGCTCGAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGTCAATTCGACCGATTTAAGCCAATGAATACGCCTTTTGAAAACAACCACCATCACCACAACAACAATAACAACAACAACAACAACAACTTCCACTTGATGTTTAGCTCTCCGTTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTATCTGGCGTAGCAGCCATCGACACGCTGTCGAAACAGCAGGATATTCCATTATGGTATCATTAA 1893 45.06 MMMMFNEMGFCDDMDFLSASITEGDAVAPPTDPEVVVEDDYSDEEIDMDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGLLPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSAGGNGLLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGIDRMRDRVSLRQPPYAMKGEVTTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSNPPPVSSVPSSFDLSTLGVPEDGQKLISELMSIYDTNIQGNKNNLNTGNSATTENQNLPQLKIQPQQDDYFRNQGLMIEGNFFDGSNVSSSHQMFTRDEGQFDRFKPMNTPFENNHHHHNNNNNNNNNNFHLMFSSPFDLSTFDYKEEVSGVAAIDTLSKQQDIPLWYH* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26941163 26945031 - CsaV3_1G042150.1 Csa01g03099 517596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03099 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 629 - -
Csa01g03099 630 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Csa01g03099 630 Coils Coil 48 68 - -
Csa01g03099 630 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 629 IPR006957 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03099 Csa-Chr1:26941163 Csa06g00461 Csa-Chr6:3935880 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30823 PF04873 EIN3 1.00E-127 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03099 K14514 - csv:101206055 1220.68