Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03099 ATGATGATGATGTTCAACGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTTCAATTACGGAAGGAGATGCTGTAGCTCCACCAACTGATCCTGAAGTCGTGGTGGAAGACGATTATTCTGATGAAGAGATCGACATGGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGTGAAGCAACGACAATCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAATATATGTTGAAGATTATGGAAGTCTGTAATGCTCAAGGTTTTGTATACGGAATAATTCCTGAGAAGGGAAAACCAGTAACCGGGGCATCGGATAATCTGCGAGAGTGGTGGAAAGACAAAGTCAGATTTGATAGAAACGGACCAGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCTGGACGAAATGATGGCTGTAATTCAATCGGTCCAACCCCTCACACCTTGCAGGAACTTCAGGATACCACCTTAGGTTCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGAGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTTGGATTGCCGAAGGACCAAGGTCTTCTGCCCTACAAGAAGCCTCATGACTTGAAGAAAGCTTGGAAAGTAGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATTGCCAAGATCCGCAAGCTTGTTAGACAATCCAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAAGAGGAGATCTTGGCCCGAGAGCTTTATCCTGATTCTTGCCCGCCTTTGTCTTCCGCTGGGGGCAATGGATTGTTGGTCATTAACGATTGTAGTGAATATGATGTAGAAGGTGCTGAGGAGGAACCGAGCTTTGATGTGCAAGATCGTAAACCTGATAATCACAGCTCATTCAACTTAGGGATTGACAGAATGAGAGATCGGGTGTCCCTTCGACAACCACCTTATGCAATGAAAGGAGAGGTTACTACAAACTTGGATTTTATGCGAAAGAGGAAACCAACCAGTGATTTGAACATGATGATGGATCAGAAGATCTATACATGTGAGTTCCTCCAATGTCCTTACAGCGAACTTCGTCTTGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGCCCATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAATGAGGTCAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGTCAAATCCACCTCCGGTCAGCTCAGTTCCGTCATCTTTCGACCTGTCGACTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAGAACAACTTAAACACTGGTAACAGTGCCACCACGGAGAACCAAAATCTCCCTCAATTAAAGATTCAACCTCAACAAGACGATTACTTCCGCAATCAAGGTCTAATGATCGAGGGGAACTTCTTTGATGGCTCGAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGTCAATTCGACCGATTTAAGCCAATGAATACGCCTTTTGAAAACAACCACCATCACCACAACAACAATAACAACAACAACAACAACAACTTCCACTTGATGTTTAGCTCTCCGTTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTATCTGGCGTAGCAGCCATCGACACGCTGTCGAAACAGCAGGATATTCCATTATGGTATCATTAA 1893 45.06 MMMMFNEMGFCDDMDFLSASITEGDAVAPPTDPEVVVEDDYSDEEIDMDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGLLPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSAGGNGLLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGIDRMRDRVSLRQPPYAMKGEVTTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSNPPPVSSVPSSFDLSTLGVPEDGQKLISELMSIYDTNIQGNKNNLNTGNSATTENQNLPQLKIQPQQDDYFRNQGLMIEGNFFDGSNVSSSHQMFTRDEGQFDRFKPMNTPFENNHHHHNNNNNNNNNNFHLMFSSPFDLSTFDYKEEVSGVAAIDTLSKQQDIPLWYH* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26941163 26945031 - CsaV3_1G042150.1 Csa01g03099 517596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03099 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 629 - -
Csa01g03099 630 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Csa01g03099 630 Coils Coil 48 68 - -
Csa01g03099 630 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Csa01g03099 630 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 629 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03099 K14514 EIN3; ethylene-insensitive protein 3 - csv:101206055 1220.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03099 Csa-Chr1:26941163 Csa06g00461 Csa-Chr6:3935880 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g03099 . 2 629 EIL Transcription Factor Family AT2G27050 58.0 3.6e-189 658.3
Csa06g00461 . 7 589 EIL Transcription Factor Family AT2G27050 57.9 8.3e-170 594.0
Csa01g03142 . 1 247 EIL Transcription Factor Family AT2G27050 67.6 3.3e-94 342.8
Csa01g03142 . 1 533 EIL Transcription Factor Family AT1G73730 55.2 2.1e-146 516.2
Csa01g03099 . 36 334 EIL Transcription Factor Family AT1G73730 63.3 2.2e-103 373.2
Csa06g00461 . 37 334 EIL Transcription Factor Family AT1G73730 61.6 6.4e-103 371.7
Csa04g00470 . 23 271 EIL Transcription Factor Family AT1G73730 55.5 3.0e-76 283.1
Csa01g03099 . 3 629 EIL Transcription Factor Family AT3G20770 61.9 2.8e-208 721.8
Csa06g00461 . 6 526 EIL Transcription Factor Family AT3G20770 61.5 2.3e-173 605.9
Csa01g03142 . 1 247 EIL Transcription Factor Family AT3G20770 69.5 9.1e-98 354.8
Csa01g03142 . 38 243 EIL Transcription Factor Family AT5G65100 59.3 4.2e-70 262.7
Csa04g00470 . 23 364 EIL Transcription Factor Family AT5G10120 56.1 6.4e-104 374.8
Csa01g03142 . 1 245 EIL Transcription Factor Family AT5G10120 55.2 1.3e-72 270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30823 PF04873 EIN3 1.00E-127 No_clan Csa TF