Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03118 ATGGAAGACGAAGCTTCCTCCAGTTTACTTTCACATATCAAGAACCCTATCCTAGCAGAGGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCCAAGCGCCCGAGATTGGACAATGATCTTAATGATGTTATGGCCGTCGGAAAATTCAAAGGCGTTGTACCGCAACAGAATGGGCGTTGGGGAGCACAAATCTACGCGAATCATCAGAGGATTTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCTCTATCAAGCTTCGTACTAGAGATTCTCACCGGAATTTCCCTTGGACTCGTCGAACAATCGAGGAACCTAATTTTCAAATCAAATTCTCTACAGATGCTGTTTTGAGTATGATCAAAGACGGATCGTATTACTCCAAATTCTCCGCTTATTTACGAACACGATCACAAATTCACGACACGAATATACAAAATCCTAAAAAAATCGACAATGGCGATGGTGATAGCCTTTTCTCTTGTAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGGAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCTGTGAAACATTTCCCGTACATCAGCGAAAGTGCAGAGGAGAACGGCGACGATATCGAAATCGTGTTCTACGATACGTCAATGAAGATATGGAAGTTCCGGTACTGTTATTGGAGGAGTAGCCAGAGTTTCGTGTTTACTAGAGGGTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGAAGAGAATGGCGGATCATTGAACTTCATTGACGTAATCTACAAGAAACCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGAAAATATTGGAAAGGGAGAAGCAAAATGAGGAGAAGGATTATGAGAAGATGAAGAAGAAGGAGCTTTTGAGCTTTGAATTGAATCATAATGATAACAAAGTTGGGGAAAAGCGAATCAGACTATTTGGAGTGAATATTAATTGA 1071 41.74 MEDEASSSLLSHIKNPILAEEVSDSNFTYYAIPEAKRPRLDNDLNDVMAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSASIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDTNIQNPKKIDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKIWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGREENGGSLNFIDVIYKKPEDDQSESSCLAAEKESVKNEKILEREKQNEEKDYEKMKKKELLSFELNHNDNKVGEKRIRLFGVNIN* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27284528 27286805 + CsaV3_1G042340.1 Csa01g03118 517615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03118 356 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 SMART B3_2 176 275 IPR003340 GO:0003677
Csa01g03118 356 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Csa01g03118 356 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Csa01g03118 356 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Csa01g03118 356 Gene3D - 165 287 IPR015300 -
Csa01g03118 356 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 Coils Coil 309 329 - -
Csa01g03118 356 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Csa01g03118 356 CDD B3_DNA 174 265 IPR003340 GO:0003677
Csa01g03118 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 356 IPR044800 GO:0003700
Csa01g03118 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 15 356 - -
Csa01g03118 356 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01873 Csa-Chr1:15745012 Csa01g03118 Csa-Chr1:27284528 3.97E-107 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa05g02582 Csa-Chr5:27134879 2.53E-56 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa04g00592 Csa-Chr4:3908314 8.76E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30825 PF02362 B3 3.30E-26 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03118 K09287 - csv:101219913 723.391