Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03118 ATGGAAGACGAAGCTTCCTCCAGTTTACTTTCACATATCAAGAACCCTATCCTAGCAGAGGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCCAAGCGCCCGAGATTGGACAATGATCTTAATGATGTTATGGCCGTCGGAAAATTCAAAGGCGTTGTACCGCAACAGAATGGGCGTTGGGGAGCACAAATCTACGCGAATCATCAGAGGATTTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCTCTATCAAGCTTCGTACTAGAGATTCTCACCGGAATTTCCCTTGGACTCGTCGAACAATCGAGGAACCTAATTTTCAAATCAAATTCTCTACAGATGCTGTTTTGAGTATGATCAAAGACGGATCGTATTACTCCAAATTCTCCGCTTATTTACGAACACGATCACAAATTCACGACACGAATATACAAAATCCTAAAAAAATCGACAATGGCGATGGTGATAGCCTTTTCTCTTGTAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGGAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCTGTGAAACATTTCCCGTACATCAGCGAAAGTGCAGAGGAGAACGGCGACGATATCGAAATCGTGTTCTACGATACGTCAATGAAGATATGGAAGTTCCGGTACTGTTATTGGAGGAGTAGCCAGAGTTTCGTGTTTACTAGAGGGTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGAAGAGAATGGCGGATCATTGAACTTCATTGACGTAATCTACAAGAAACCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGAAAATATTGGAAAGGGAGAAGCAAAATGAGGAGAAGGATTATGAGAAGATGAAGAAGAAGGAGCTTTTGAGCTTTGAATTGAATCATAATGATAACAAAGTTGGGGAAAAGCGAATCAGACTATTTGGAGTGAATATTAATTGA 1071 41.74 MEDEASSSLLSHIKNPILAEEVSDSNFTYYAIPEAKRPRLDNDLNDVMAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSASIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDTNIQNPKKIDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKIWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGREENGGSLNFIDVIYKKPEDDQSESSCLAAEKESVKNEKILEREKQNEEKDYEKMKKKELLSFELNHNDNKVGEKRIRLFGVNIN* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27284528 27286805 + CsaV3_1G042340.1 Csa01g03118 517615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03118 356 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 SMART B3_2 176 275 IPR003340 GO:0003677
Csa01g03118 356 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Csa01g03118 356 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Csa01g03118 356 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Csa01g03118 356 Gene3D - 165 287 IPR015300 -
Csa01g03118 356 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Csa01g03118 356 Coils Coil 309 329 - -
Csa01g03118 356 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Csa01g03118 356 CDD B3_DNA 174 265 IPR003340 GO:0003677
Csa01g03118 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 356 IPR044800 GO:0003700
Csa01g03118 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 15 356 - -
Csa01g03118 356 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03118 K09287 RAV; RAV-like factor - csv:101219913 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01873 Csa-Chr1:15745012 Csa01g03118 Csa-Chr1:27284528 3.97E-107 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa05g02582 Csa-Chr5:27134879 2.53E-56 dispersed
Csa01g03118 Csa-Chr1:27284528 Csa04g00592 Csa-Chr4:3908314 8.76E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30825 PF02362 B3 3.30E-26 CL0405 Csa TF