Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03120 ATGAGGCCTGTCAAACGCGAACCCACCGTTAGCACCCGCAGTAATCGAAATAGAGGCGGCGACGGCGGTGGCGGTGGCGGTGGCGGCGCTGTTGACGGTGCGAGTTTAAGGGATAGTAAGCGGGAGAGGGTTGCCCGGGAGAGAGAGAACTCCGGAGAGGAGAATATGAATGAAGAAGTGGGTCAGCAGGATTTGACGAAGAGGCGGGTCCTTCGCTCTCGGTACCTCGCGGTTATTCATGAGATTAGTGAAAGAAGAGAGGATTTGTCGAAGGATTTGGATAAGTTTAATGTTATCATCAATGAAGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCTTTGCAAGATATTGCCAACTCCCTTGTGACCTCTATTAGGTCCCAGTCAAATGAAGGTGTTACTCCATCAGATTTTGTTAGTTGTCTACTCAGAGAGTTTGCTGACATTAACGGTAGTATAAACTCTGAAGAACAAGACCTGGTTTCTGTCAATTGGAAAGATATTGGACTCAGTGTTTCGTCTATTTTCATGAATGGTTATGGATGCCGCACCATGCTTGGACCTATGAGCAATCAGTTGAAGCAGCGAAAGACTAATAATGTTCCCAGGAAACGTGTCAGGCCTACTGAAAGTTCCAGACCTGCAGAGGTTGAAGATAATGGATCCGAACCAAAAACAGATACAGATAAGAACATGGGCATCATGTTTGGAATTTTGAGGAGGAATAAAACCGTTAAACTAGAACATTTGATATTGAATAGAAAGTCTTTCGGACAGACAGTGGAGAATTTATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGAGCTGAGATAACTATTGATAAAAATGGTTCTCATTTTGTGTCACCGAAGAATGCCCCTGCTCATAGTGCCATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTACAAGGATTGGAAGGTACGAACTTAG 996 43.98 MRPVKREPTVSTRSNRNRGGDGGGGGGGGAVDGASLRDSKRERVARERENSGEENMNEEVGQQDLTKRRVLRSRYLAVIHEISERREDLSKDLDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFADINGSINSEEQDLVSVNWKDIGLSVSSIFMNGYGCRTMLGPMSNQLKQRKTNNVPRKRVRPTESSRPAEVEDNGSEPKTDTDKNMGIMFGILRRNKTVKLEHLILNRKSFGQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDYKDWKVRT* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27291132 27294459 - CsaV3_1G042360.1 Csa01g03120 517617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03120 331 MobiDBLite consensus disorder prediction 198 237 - -
Csa01g03120 331 MobiDBLite consensus disorder prediction 212 235 - -
Csa01g03120 331 PANTHER UNCHARACTERIZED 38 329 IPR027786 GO:0005634|GO:0006281|GO:0030915
Csa01g03120 331 MobiDBLite consensus disorder prediction 1 63 - -
Csa01g03120 331 Pfam Nse4 C-terminal 254 328 IPR014854 -
Csa01g03120 331 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 38 329 - -
Csa01g03120 331 MobiDBLite consensus disorder prediction 35 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03120 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 630.943
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g128 . . . . . Bpe08g01238 . . Cmo10g01012 Cmo11g00835 Cma10g00964 . . . Sed08g1045 . Cpe18g00141 Bhi02g01603 Tan09g0895 Cmetu02g0721 . . . . . . . . . . . . . Cone18ag0124 Cone11ag1467 Lsi06g00472 . . . . . . . . . . . . . . Cma11g00828 . . . . Cpe04g00939 . . . . . . . Cla03g01320 Cam03g1398 Cec03g1430 Cco03g1418 Clacu03g1417 Cmu03g1978 Cre03g1651 . Csa01g03120 Chy02g01406 Cme02g00472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g03120 . 62 329 Non-SMC Element family AT1G51130 57.2 1.1e-80 297.4
Csa01g03120 . 62 328 Non-SMC Element family AT3G20760 55.4 2.8e-81 299.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35