Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03142 ATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGAGAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAGCCAAAGCAGACGTCCGACCAGGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTTAAATATATGTTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAGGAAAAAGTTAAATTTGACAAGAATGGACCGGCTGCCATAACCAAGTATGAAGCAGAATGTCTTGCCAAAGGAGAGGCAGATGGAAATGGAAATGGTAATTCCCAGAGCGTTCTTCAAGACCTTCAGGATGCAACACTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTATCCTTTAGAAAAAGGGGTTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAACTTGGGCTATCCCATGGCAATAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTAGGAGTCTTAACAGCTGTAATAAAGCATATGTCACCCGACATTGCAAAGATAAGGAGACACGTACGGCAGTCAAAGTGCTTACAAGACAAAATGACGGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCAGCAACCAAGTAGTGATAATGGAGCTTCTGGAATAACGGAGACACCAGTACGTGGTCATGTGGAAAAACAAGCTGCAGCAAGTAGTGAAAGTGACTATGATGTTGATCTTGCCGATGATGGTGTCGGCTCAGTTTCTTCTAAAGAGGATAGGAGACCTCGATCCGTGGAGGTGGAGCCATCCAGTAATCTACCCAATAATTCTCAACCTGCTGATGGAAAGGAGCAAGGTGAAAAACAGAGAAAAAGGCATCGTGGTGGCAGGATAAAGCCTGCCAACCGAACACTGGCTCCCTCTCAGAACGCAGAAGAACCAAGTGTTGAACCAAGAAATACTCAACTTGATATTAACCATTCTAATGTACCGCTAGATAGATTTGAAATTCCAGGAAACCAACAACAACAGGACATTGCCACAGCTTTGAGGCCACTGGAGAAAGACTTAGATGTCCAATCAGAAATACCCGATCCCCAGTTGTTCAACATGTTCTCTGCACCATCGTCTGATAATGTCAATATAATTTCCACTCAGAGCATGTTTGTTGATGGAAGGCCTTTGTTGTATCCTGTTATGCAGAATTCTGAGATGCAACACGAAAATGCTTACAATATTTATAACCCATCGGTGGAATATAGATCCAATTTTGATGTGCAGCATTCTCAATTTGTAAATGAGCCTCAAATGAGACTGGAGGAAGGAGGAGTACATATTCCAACACAACATAGAAACAATGAGACTATAGCAGGAGAATTAAACTATGTAAAAGAAACGTTCAACGCCAAACAAGATAGGCCTGTTGATCCACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGAGCATTTAACAGTCCGTTCCATCTTGGAATCGATGGTGCAAGCTCATTTGATGACTTTTTGGTTGACGACGATTTGATTCAATACTTCGGAGCCTAA 1677 42.93 MWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAITKYEAECLAKGEADGNGNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIQQPSSDNGASGITETPVRGHVEKQAAASSESDYDVDLADDGVGSVSSKEDRRPRSVEVEPSSNLPNNSQPADGKEQGEKQRKRHRGGRIKPANRTLAPSQNAEEPSVEPRNTQLDINHSNVPLDRFEIPGNQQQQDIATALRPLEKDLDVQSEIPDPQLFNMFSAPSSDNVNIISTQSMFVDGRPLLYPVMQNSEMQHENAYNIYNPSVEYRSNFDVQHSQFVNEPQMRLEEGGVHIPTQHRNNETIAGELNYVKETFNAKQDRPVDPQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGA* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27520569 27524231 + CsaV3_1G042580.1 Csa01g03142 517639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03142 558 MobiDBLite consensus disorder prediction 17 40 - -
Csa01g03142 558 MobiDBLite consensus disorder prediction 304 318 - -
Csa01g03142 558 Pfam Ethylene insensitive 3 1 242 IPR006957 GO:0005634
Csa01g03142 558 MobiDBLite consensus disorder prediction 266 359 - -
Csa01g03142 558 MobiDBLite consensus disorder prediction 288 302 - -
Csa01g03142 558 Gene3D - 115 253 IPR023278 GO:0003700|GO:0005634
Csa01g03142 558 Gene3D - 29 107 IPR023278 GO:0003700|GO:0005634
Csa01g03142 558 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 557 IPR006957 GO:0005634
Csa01g03142 558 SUPERFAMILY DNA-binding domain of EIN3-like 123 245 IPR023278 GO:0003700|GO:0005634
Csa01g03142 558 MobiDBLite consensus disorder prediction 339 359 - -
Csa01g03142 558 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03142 Csa-Chr1:27520569 Csa06g00461 Csa-Chr6:3935880 8.91E-122 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30826 PF04873 EIN3 5.60E-124 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03142 K14514 - csv:101210347 1107.43