Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03164 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATTCAAATGGTGCACCATCGACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCGGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATCCTCAGAAGATGCAGCATGTTTCATCCACTTTGCCGGCAATGCACGGTGAATGTCTGGCACAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTATCCCATGGTTGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAATCAATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATTAGAAGGTCGAGAAGTAGTGGAGGTCGTTTTGCGAAGAAAAGCGAAGCTGAGGGAAAGGAAAAGCATTCTGATAAAGTAAACGAGAGTGATTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 810 45.43 MQSKSETNNQLDSNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDPQKMQHVSSTLPAMHGECLAQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEAEGKEKHSDKVNESDYRLNDGSEQQNGSSLTNKASE* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27673273 27678951 - CsaV3_1G042800.1 Csa01g03164 517661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03164 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 226 250 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 206 225 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 82 104 - -
Csa01g03164 269 Gene3D - 171 233 - -
Csa01g03164 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 261 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 39 67 - -
Csa01g03164 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Csa01g03164 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 261 - -
Csa01g03164 269 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 196 269 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 38 104 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 251 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03164 Csa-Chr1:27673273 Csa04g01062 Csa-Chr4:8513729 3.19E-36 dispersed
Csa01g03164 Csa-Chr1:27673273 Csa06g02549 Csa-Chr6:22607749 2.22E-93 wgd
Csa01g03164 Csa-Chr1:27673273 Csa07g02013 Csa-Chr7:19647054 4.04E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30829 PF02045 CBFB_NFYA 4.00E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03164 K08064 - csv:101212860 519.235