Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03164 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATTCAAATGGTGCACCATCGACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCGGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATCCTCAGAAGATGCAGCATGTTTCATCCACTTTGCCGGCAATGCACGGTGAATGTCTGGCACAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTATCCCATGGTTGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAATCAATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATTAGAAGGTCGAGAAGTAGTGGAGGTCGTTTTGCGAAGAAAAGCGAAGCTGAGGGAAAGGAAAAGCATTCTGATAAAGTAAACGAGAGTGATTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 810 45.43 MQSKSETNNQLDSNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDPQKMQHVSSTLPAMHGECLAQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEAEGKEKHSDKVNESDYRLNDGSEQQNGSSLTNKASE* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27673273 27678951 - CsaV3_1G042800.1 Csa01g03164 517661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03164 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 226 250 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 206 225 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 82 104 - -
Csa01g03164 269 Gene3D - 171 233 - -
Csa01g03164 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 261 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 39 67 - -
Csa01g03164 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Csa01g03164 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 261 - -
Csa01g03164 269 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Csa01g03164 269 MobiDBLite consensus disorder prediction 196 269 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 38 104 - -
Csa01g03164 269 MobiDBLite consensus disorder prediction 251 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03164 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212860 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03164 Csa-Chr1:27673273 Csa04g01062 Csa-Chr4:8513729 3.19E-36 dispersed
Csa01g03164 Csa-Chr1:27673273 Csa06g02549 Csa-Chr6:22607749 2.22E-93 wgd
Csa01g03164 Csa-Chr1:27673273 Csa07g02013 Csa-Chr7:19647054 4.04E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g03164 . 1 235 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.0 2.8e-51 199.1
Csa06g02549 . 105 342 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 5.5e-48 188.3
Csa01g03164 . 1 235 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 5.1e-46 181.8
Csa06g03846 . 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 51.9 2.2e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30829 PF02045 CBFB_NFYA 4.00E-25 No_clan Csa TF