Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03195 ATGTTTCAAGATGAAGGTACATCCTCCATAACTTCCTCTCCTCTTCAGTTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTTAAATCTGAGGAGAGGGATGGTGATACAATGCAGCGAATTGCGGCTTATTTCGCCGAGGCTCTCGCGGATAGGATCCTCAAGACTTGGCCTGGTCTTTACAAGGCCTTTAACTCTACTAAGATACCAATGGTGTCAGAAGAGATTCTAGTTAAGAAATTGTTCTTTGATATGTTTCCATTCCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGATTCATATTATTGATCTCAATGCTAATGAAACTGCTCAATGGCTTGCTCTTTTGCAAATTTTGAGTGTGAGGCCTGAAGGACCTCCACATTTGAGAATCACTGGAGTTCATCCACGCCAAGAGATTCTGGATCAAATGGCTCGTAGGTTGACCAATGAAGCCGAGAAATTGGATATCCCGTTTCAATTCAATTCCGTTGTCAGTCGACTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACCGGGGAGGCTCTGGCTATCAATTCAGTTCTTCAGTTGCACAACTTTTTGGGATATGATAATGAAGCCTTGCAAAAGCCATCTCCATCAGCAGCCAAGAATGTAAATGGAGTTCAATACTCGAGATACCCGCATCTGAACCAAACCACATTGAGGGAGTTACTCGACAAGGATATGGTTAACGGATGCAGTCCAAGTCCCGATTCAGTTTCCTCATCAGCACTATCTCAGGCTAATGCGACGAAAATCGACAGTTTTTTGAATGGATTGTGGAGTTTGACACCGAAGGTGATGGTCGTAACGGAACAAGATTCTAACCATAACGGTACAACAGTTATGGAGAGATTATTGGAAGCTCTCCACACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGGCATGAAAAACATGAGACATGGAATCAGCGGTTCGACGTCGCCGGGTTTAGGCAAGTGTCTTTGAGTTATTATGGAATGCTGCAGGCTCGGAGCTTGCTGCAGGGGTATGGTTGTGGTGGTTATAGGATGAAGGAAGAGAATGGTTGTGTGATGATTTGTTGGCAAGACCGTCCATTGTTTTCGGTTTCGGCTTGGAGATGTTGTAAGTAG 1308 43.65 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERDGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEEILVKKLFFDMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQILSVRPEGPPHLRITGVHPRQEILDQMARRLTNEAEKLDIPFQFNSVVSRLEDLDMEKLRVKTGEALAINSVLQLHNFLGYDNEALQKPSPSAAKNVNGVQYSRYPHLNQTTLRELLDKDMVNGCSPSPDSVSSSALSQANATKIDSFLNGLWSLTPKVMVVTEQDSNHNGTTVMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKHETWNQRFDVAGFRQVSLSYYGMLQARSLLQGYGCGGYRMKEENGCVMICWQDRPLFSVSAWRCCK* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28029961 28032424 - CsaV3_1G043110.1 Csa01g03195 517692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03195 435 Pfam GRAS domain family 40 432 IPR005202 -
Csa01g03195 435 PANTHER SCARECROW-LIKE PROTEIN 3 2 41 IPR030008 GO:0003700|GO:0005634|GO:0009739
Csa01g03195 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 434 IPR005202 -
Csa01g03195 435 ProSiteProfiles GRAS family profile. 1 432 IPR005202 -
Csa01g03195 435 PANTHER SCARECROW-LIKE PROTEIN 3 43 434 IPR030008 GO:0003700|GO:0005634|GO:0009739
Csa01g03195 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 41 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03195 Csa-Chr1:28029961 Csa05g02830 Csa-Chr5:28763181 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30831 PF03514 GRAS 2.90E-129 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03195 - - csv:101215435 842.417