Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03220 ATGTGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACGCCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCTTCGGAGTTGGCGTTAGCGTTTTGCCTCTGCTTTCAGGCCTCGCGCCGTCAAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGTGGCGGCGACGACGGTGGCGGCGGAATTCAATTCAATGGGAATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCCGGGGTCGGAACTTGCCATGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCACCGGCGGTGCAGAAGCTGCTGTAAAAGCCGTGGGTTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCAGCAGCTCGAAGGAGAGAACGTCAGATGATGGGCGCAGCGTCGGATGCAGCGGCCGGTGGGACCTCGTCGGGGTCTACGTCCGGCGGGAAGAAGCCGAGGTTGATTGCTTCACAGACGACTACTAATTCTCATACTTCCACTTCAAATACTCCAACACCAAGCTTTGACGCTTCCTCAGCCGCTGATATGAGTAGTAAAAAGGCAAAAAAGCTGCCGGAACAAATCCGAGCGCCTGCGGTGTTCAAATGCGTGCGGGTAACAGCAGTGGAGGGTGGCACTAGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTTAAGATCGGCGGCCATGTTTTTAAAGGTTATTTGTACGACCATGGAGTAGAAGCTAGAGATGGGTTTCCGATGATGTCGAATTTGCATCTTGGAGATGGCGGTTCAACTTCGTCACCGGTCATTGATCCTGCTGATGTTTACGGCAGCTCCACCACCCGCGGTGGGGGACTGGCTGGAGGCTCCGGCTATGGTAATTCCATAAATTGA 924 53.46 MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGSGYGNSIN* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28325257 28328137 + CsaV3_1G043360.1 Csa01g03220 517717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03220 307 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 95 137 IPR006510 -
Csa01g03220 307 Pfam Domain of unknown function (DUF702) 95 256 - -
Csa01g03220 307 MobiDBLite consensus disorder prediction 140 204 - -
Csa01g03220 307 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 204 255 IPR006511 -
Csa01g03220 307 MobiDBLite consensus disorder prediction 151 194 - -
Csa01g03220 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 76 307 - -
Csa01g03220 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 76 307 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03220 Csa06g02517 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03220 Csa-Chr1:28325257 Csa05g02859 Csa-Chr5:28935755 9.15E-53 dispersed
Csa01g03220 Csa-Chr1:28325257 Csa06g02517 Csa-Chr6:22374067 4.55E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30832 PF05142 DUF702 9.90E-57 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03220 - - csv:101217349 476.863