Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03255 ATGGCCACTCAGGCTCTTGTTTCTTCTTCTTTAACCTCTTCAGTGGGTGCTGCCAGACAGAGATTAGGGGCAAGGCCTTCTTTTGGATCTTCCAGGAAATCAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCAGACAGGCAACTCTGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTGCCAGGCGATTTCGGGTTTGACCCACTGGGGCTATCTGATCCCGAAGGCACAGGAGGGTTCATCGAGCCAAGATGGTTGGCATACGGCGAAGTGATCAACGGAAGGTTTGCAATGTTGGGAGCAGCAGGAGCCATAGCCCCAGAAATCTTTGGATCACTGGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTTGAAATGGCTCTGATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGGCCAAGCCAGGATCCATGGGAAAACAATACTTTTTGGGCCTGGAGAAGTTCTTGGGTGGATCAGGGGACCCAGCTTACCCTGGCGGGCCATTGTTCAACCCACTAGGGTTTGGGAAAGATGAGAAGTCAATGAAGGAATTGAAGTTGAAGGAAATTAAGAATGGAAGGCTTGCAATGTTGGCAATTTTGGGTTACTTTATACAAGGTCTTGTTACTGGTGTTGGACCTTACCAAAACCTTTTGGATCATTTGTCTGACCCTGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG 822 47.69 MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28713310 28714856 - CsaV3_1G043710.1 Csa01g03255 517752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03255 273 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Csa01g03255 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
Csa01g03255 273 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 272 - -
Csa01g03255 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Csa01g03255 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 272 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03255 Csa-Chr1:28713310 Csa02g01960 Csa-Chr2:18395695 3.08E-53 dispersed
Csa01g03255 Csa-Chr1:28713310 Csa01g00560 Csa-Chr1:3626647 3.79E-48 transposed
Csa01g03255 Csa-Chr1:28713310 Csa01g00241 Csa-Chr1:1525225 4.36E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03255 K08909 - csv:101202993 549.28