Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03281 ATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAACATTCTGTTGATATTGATGCCGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGTGTCCAATGCTCTTTCAGAGCCAGAAGCTGCTTCTATTCCTTCTGATCCATTTCAAACTTATGATGCATTACATAATCAACAGATTGATATAGAGGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAAGGATTGGTTAGACTTCAAGCTCTCGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCTATAACTCTACGGTGTATGCAAGCTTTAGTGAGAGTACAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAGCAACTTGAAAACGAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTCGGATCTGTAGAAGACATTCAAGCAAAATTATTGAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCGAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATCAATCTGAGAGATGGAGTGATGATTCGCGAGAATGGATCATCTGAGGGCAAAAGTAACACCAAGTCTCATTTAAAAACTACTGGCAAGAAGACAAACTTGGTGACTGACCAATCAAACGTCTCAAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCATCATCCTCCACTAAGTCAGCTGGCACTGTAGAAATATCCAGTGCACAGGTTCAAAAGCTCAAGCACAAACTGGCACCTGAGAGGCCATTTGAAGATGTCAAACCAAAAGTGGATACTGGTTTAAGATCACACAGCAATCCGAAAGAGAGATCCACACCGTTGGTAAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCCGGCAGTCAAAACCAAACGGCAAGAAATTCCACTGGCAAAGCGACAATGATGAAGTCAATCAATGATAAACCCAGGTCAATTTCCAGATCAAGTGACTCAAAATCTGCAAAACCTAAATCACATAATTGA 1302 43.24 MGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEVSNALSEPEAASIPSDPFQTYDALHNQQIDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQQLENEARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTGKKTNLVTDQSNVSSQKTAASHSDGCGSSSSTKSAGTVEISSAQVQKLKHKLAPERPFEDVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTARNSTGKATMMKSINDKPRSISRSSDSKSAKPKSHN* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29130426 29138594 - CsaV3_1G043970.1 Csa01g03281 517778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03281 433 MobiDBLite consensus disorder prediction 279 338 - -
Csa01g03281 433 SMART iq_5 95 117 IPR000048 GO:0005515
Csa01g03281 433 SMART iq_5 118 139 IPR000048 GO:0005515
Csa01g03281 433 MobiDBLite consensus disorder prediction 277 433 - -
Csa01g03281 433 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Csa01g03281 433 MobiDBLite consensus disorder prediction 416 433 - -
Csa01g03281 433 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Csa01g03281 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
Csa01g03281 433 Gene3D - 96 138 - -
Csa01g03281 433 MobiDBLite consensus disorder prediction 386 415 - -
Csa01g03281 433 MobiDBLite consensus disorder prediction 343 367 - -
Csa01g03281 433 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Csa01g03281 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03281 - - - csv:101204117 789.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03281 Csa-Chr1:29130426 Csa07g01107 Csa-Chr7:10684122 7.10E-85 dispersed
Csa07g00302 Csa-Chr7:2283966 Csa01g03281 Csa-Chr1:29130426 2.13E-14 dispersed
Csa01g03281 Csa-Chr1:29130426 Csa04g02549 Csa-Chr4:25138287 5.03E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01776 . 1 470 IQD Protein Family AT3G52290 55.6 5.8e-104 374.8
Csa01g03281 . 1 406 IQD Protein Family AT3G22190 57.6 9.8e-96 347.4
Csa04g02549 . 1 438 IQD Protein Family AT2G26180 60.5 3.4e-117 418.7
Csa06g03677 . 1 274 IQD Protein Family AT2G33990 52.9 1.5e-62 236.5
Csa04g00841 . 217 392 IQD Protein Family AT2G33990 54.7 7.3e-49 191.0
Csa06g03677 . 1 232 IQD Protein Family AT3G15050 51.3 1.2e-56 216.9
Csa04g00841 . 220 393 IQD Protein Family AT3G15050 61.6 7.4e-54 207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42