Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03281 ATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAACATTCTGTTGATATTGATGCCGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGTGTCCAATGCTCTTTCAGAGCCAGAAGCTGCTTCTATTCCTTCTGATCCATTTCAAACTTATGATGCATTACATAATCAACAGATTGATATAGAGGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAAGGATTGGTTAGACTTCAAGCTCTCGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCTATAACTCTACGGTGTATGCAAGCTTTAGTGAGAGTACAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAGCAACTTGAAAACGAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTCGGATCTGTAGAAGACATTCAAGCAAAATTATTGAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCGAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATCAATCTGAGAGATGGAGTGATGATTCGCGAGAATGGATCATCTGAGGGCAAAAGTAACACCAAGTCTCATTTAAAAACTACTGGCAAGAAGACAAACTTGGTGACTGACCAATCAAACGTCTCAAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCATCATCCTCCACTAAGTCAGCTGGCACTGTAGAAATATCCAGTGCACAGGTTCAAAAGCTCAAGCACAAACTGGCACCTGAGAGGCCATTTGAAGATGTCAAACCAAAAGTGGATACTGGTTTAAGATCACACAGCAATCCGAAAGAGAGATCCACACCGTTGGTAAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCCGGCAGTCAAAACCAAACGGCAAGAAATTCCACTGGCAAAGCGACAATGATGAAGTCAATCAATGATAAACCCAGGTCAATTTCCAGATCAAGTGACTCAAAATCTGCAAAACCTAAATCACATAATTGA 1302 43.24 MGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEVSNALSEPEAASIPSDPFQTYDALHNQQIDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQQLENEARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTGKKTNLVTDQSNVSSQKTAASHSDGCGSSSSTKSAGTVEISSAQVQKLKHKLAPERPFEDVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTARNSTGKATMMKSINDKPRSISRSSDSKSAKPKSHN* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29130426 29138594 - CsaV3_1G043970.1 Csa01g03281 517778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03281 433 MobiDBLite consensus disorder prediction 279 338 - -
Csa01g03281 433 SMART iq_5 95 117 IPR000048 GO:0005515
Csa01g03281 433 SMART iq_5 118 139 IPR000048 GO:0005515
Csa01g03281 433 MobiDBLite consensus disorder prediction 277 433 - -
Csa01g03281 433 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Csa01g03281 433 MobiDBLite consensus disorder prediction 416 433 - -
Csa01g03281 433 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Csa01g03281 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
Csa01g03281 433 Gene3D - 96 138 - -
Csa01g03281 433 MobiDBLite consensus disorder prediction 386 415 - -
Csa01g03281 433 MobiDBLite consensus disorder prediction 343 367 - -
Csa01g03281 433 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Csa01g03281 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03281 Csa-Chr1:29130426 Csa07g01107 Csa-Chr7:10684122 7.10E-85 dispersed
Csa07g00302 Csa-Chr7:2283966 Csa01g03281 Csa-Chr1:29130426 2.13E-14 dispersed
Csa01g03281 Csa-Chr1:29130426 Csa04g02549 Csa-Chr4:25138287 5.03E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03281 - - csv:101204117 789.645