Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03284 ATGGACGGAGGGCGGTCGTTCAATCGTATCATCTTCCTTCTCTTCGCCGTTCTTCTTCTCTTGCCGGTCATCTTTGCTGCCAAATTTGAATATTGCGATAGGAGAGGTGATTATCCTGTGAAGGTGGGTGAACTCGAAGTATCTCCTGATCCAGTAAAGAGTGGCCAGCCTGCCACGTTTACCGTTTCAGCCTCAACTGAGAAGAATCTCTCCGGTGGGAAGTTCGTGGTCGAGGTCTCTTTATTTGGGCTGCATATACATTCAGAAAGTCATGATCTTTGTGAAGAGACTTCATGTCCAATTGCACCTGGAAAATTCTCTTTATCTCATTCCCAAAGCCTACCTCCATTTACCCCACCAGGTTCATATACCGTTAAAATAATATTGAGAGATAGCAAGAATCAACAGTTGACATGCATCAACTTCAAGCTCAAAATTGTTTTTGGTGATGCGGAATCAGCAATTTCTGAAAAGTACTTGGTTGCTGAGAGTTGA 495 43.64 MDGGRSFNRIIFLLFAVLLLLPVIFAAKFEYCDRRGDYPVKVGELEVSPDPVKSGQPATFTVSASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSYTVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29151844 29158113 - CsaV3_1G044000.1 Csa01g03284 517781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03284 164 SMART pgtp_13 29 144 IPR003172 -
Csa01g03284 164 Pfam ML domain 28 146 IPR003172 -
Csa01g03284 164 Gene3D - 27 149 - -
Csa01g03284 164 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 1 156 IPR039670 -
Csa01g03284 164 SUPERFAMILY E set domains 27 147 IPR014756 -
Csa01g03284 164 CDD PG-PI_TP 29 143 IPR033917 GO:0032366
Csa01g03284 164 PANTHER PHOSPHATIDYLGLYCEROL/PHOSPHATIDYLINOSITOL TRANSFER PROTEIN DDB_G0282179 ISOFORM X1-RELATED 1 156 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03284 Csa06g01114 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03284 Csa-Chr1:29151844 Csa03g03507 Csa-Chr3:31398323 8.68E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03284 - - csv:101205019 316.62