Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03339 ATGAACCTCCAAGTCGCCGACCACGATCTCAACGCCCTTCTTCTTCCTCCCACTAACTTCTCCATGGTTGAAGACGGCATTTTCCGGTCCGGCTTCCCTCAGCCCTCCAATTTCTCCTTCCTCCGCAGCCTCAACCTCCGCTCAATCATATATTTGTGTCCTGAGCCCTACCCTGAGGAGAATTTGAAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGAAAAAAGGAGCCTTTCGTTTCAATTCCGAAGGATGCTATTCTTGAAGCACTAAAAGTCCTAATTGATGTTAGGAATCATCCCATCTTGATCCACTGCAAGCGTGGAAAGCATCGCACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACATCGGTGTTCGAGGAGTACCAGCGATTTGCAGGGATAAAATCGAGGGCAACGGATCTACAATTCATCGAGACATTCGACGCCGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACAAAAGTTTAG 603 45.44 MNLQVADHDLNALLLPPTNFSMVEDGIFRSGFPQPSNFSFLRSLNLRSIIYLCPEPYPEENLKFLKANNIKLFQFKIEGKKEPFVSIPKDAILEALKVLIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGIKSRATDLQFIETFDAGSLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTKV* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29942734 29944973 - CsaV3_1G044550.1 Csa01g03339 517836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03339 200 CDD PFA-DSP_Siw14 13 160 - -
Csa01g03339 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 159 IPR029021 -
Csa01g03339 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Csa01g03339 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Csa01g03339 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 11 183 - -
Csa01g03339 200 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
Csa01g03339 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Csa01g03339 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Csa01g03339 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Csa01g03339 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Csa01g03339 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Csa01g03339 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03339 Csa-Chr1:29942734 Csa06g02393 Csa-Chr6:21388398 2.35E-68 dispersed
Csa01g03339 Csa-Chr1:29942734 Csa06g01343 Csa-Chr6:11293158 2.38E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03339 K18045 - csv:101211082 402.134