Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03339 | ATGAACCTCCAAGTCGCCGACCACGATCTCAACGCCCTTCTTCTTCCTCCCACTAACTTCTCCATGGTTGAAGACGGCATTTTCCGGTCCGGCTTCCCTCAGCCCTCCAATTTCTCCTTCCTCCGCAGCCTCAACCTCCGCTCAATCATATATTTGTGTCCTGAGCCCTACCCTGAGGAGAATTTGAAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGAAAAAAGGAGCCTTTCGTTTCAATTCCGAAGGATGCTATTCTTGAAGCACTAAAAGTCCTAATTGATGTTAGGAATCATCCCATCTTGATCCACTGCAAGCGTGGAAAGCATCGCACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACATCGGTGTTCGAGGAGTACCAGCGATTTGCAGGGATAAAATCGAGGGCAACGGATCTACAATTCATCGAGACATTCGACGCCGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACAAAAGTTTAG | 603 | 45.44 | MNLQVADHDLNALLLPPTNFSMVEDGIFRSGFPQPSNFSFLRSLNLRSIIYLCPEPYPEENLKFLKANNIKLFQFKIEGKKEPFVSIPKDAILEALKVLIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGIKSRATDLQFIETFDAGSLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTKV* | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29942734 | 29944973 | - | CsaV3_1G044550.1 | Csa01g03339 | 517836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03339 | 200 | CDD | PFA-DSP_Siw14 | 13 | 160 | - | - | |
Csa01g03339 | 200 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 15 | 159 | IPR029021 | - | |
Csa01g03339 | 200 | Gene3D | Protein tyrosine phosphatase superfamily | 13 | 163 | IPR029021 | - | |
Csa01g03339 | 200 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 19 | 170 | IPR020422 | GO:0006470|GO:0008138 | |
Csa01g03339 | 200 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE DSP5 | 11 | 183 | - | - | |
Csa01g03339 | 200 | Pfam | Tyrosine phosphatase family | 14 | 162 | IPR004861 | - | |
Csa01g03339 | 200 | PRINTS | Plant and fungal dual specificity phosphatase signature | 14 | 31 | IPR020428 | GO:0016791 | |
Csa01g03339 | 200 | PRINTS | Plant and fungal dual specificity phosphatase signature | 51 | 64 | IPR020428 | GO:0016791 | |
Csa01g03339 | 200 | PRINTS | Plant and fungal dual specificity phosphatase signature | 70 | 84 | IPR020428 | GO:0016791 | |
Csa01g03339 | 200 | PRINTS | Plant and fungal dual specificity phosphatase signature | 87 | 101 | IPR020428 | GO:0016791 | |
Csa01g03339 | 200 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 109 | 119 | IPR016130 | GO:0016311|GO:0016791 | |
Csa01g03339 | 200 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 11 | 183 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03339 | Csa-Chr1:29942734 | Csa06g02393 | Csa-Chr6:21388398 | 2.35E-68 | dispersed | |
Csa01g03339 | Csa-Chr1:29942734 | Csa06g01343 | Csa-Chr6:11293158 | 2.38E-78 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03339 | K18045 | - | csv:101211082 | 402.134 |