Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03342 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCCCTTGCACCATCCTTGCGCGAAGATGCACTTTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCAGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGGGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCCACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCATTGCGTGGTTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCGTATCCAGGAGGAAGTACAAATTGGTCTAGGGCTTCATTTATTCCCAGTCCACGATGGCAAGGTCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAGCTAGGATCGGTTTCGTCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTTTGTCGATTTCACCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTGCCACTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCATCATCAGCCAATGCCCCGGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGTTGAAGCAGGATCTGCAAAGCCAAGGCGGCTATCAATCTCGGAGAGTCGAGAAATGCCATCTGATGATGAAAATGACGCTGAGGGCTGA 1194 46.06 MEYDSGIPMSVTEGHSSALAPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSISESREMPSDDENDAEG* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29987598 30001215 + CsaV3_1G044580.1 Csa01g03342 517839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03342 397 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Csa01g03342 397 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Csa01g03342 397 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Csa01g03342 397 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Csa01g03342 397 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Csa01g03342 397 Gene3D - 45 121 - -
Csa01g03342 397 Gene3D - 247 333 - -
Csa01g03342 397 MobiDBLite consensus disorder prediction 239 258 - -
Csa01g03342 397 MobiDBLite consensus disorder prediction 369 397 - -
Csa01g03342 397 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Csa01g03342 397 MobiDBLite consensus disorder prediction 239 255 - -
Csa01g03342 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 251 - -
Csa01g03342 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 250 394 - -
Csa01g03342 397 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Csa01g03342 397 PANTHER PROTEIN PHOSPHATASE RELATED 250 394 - -
Csa01g03342 397 PANTHER PROTEIN PHOSPHATASE RELATED 10 251 - -
Csa01g03342 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Csa01g03342 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872
Csa01g03342 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Csa01g03342 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Csa01g03342 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Csa01g03342 397 Gene3D - 122 174 - -
Csa01g03342 397 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Csa01g03342 397 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Csa01g03342 397 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Csa01g03342 397 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Csa01g03342 397 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Csa01g03342 397 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Csa01g03342 397 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Csa01g03342 397 SUPERFAMILY CCCH zinc finger 262 287 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00921 Csa-Chr1:5755151 Csa01g03342 Csa-Chr1:29987598 4.35E-11 dispersed
Csa01g03342 Csa-Chr1:29987598 Csa03g01433 Csa-Chr3:10732393 4.17E-102 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30837 PF00642 zf-CCCH 2.70E-10 CL0537 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03342 - - csv:101221929 835.484