Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03408 ATGGCTGCCTCTAACACCAATGTCTCCGGCGACGACCACGATCGGGTCTTGGCCACCGCTCAACACATCGTTAAGAGCCTCAATACCCCTAAAGAGGTTCGTGAGGATATGCTCTTCATTCTCTCCACTTTTGATAATCGTCTTTCCAGTATCAGTACTATGATCAACAATGATGACTCCAACATTAAGAACTCTAGGTTAGACGCCGCCGAAAAGGTGATTCTACGTTGGGACCCTAATTCCGATCAGTCCAGACGGTCCTTTAATTGGGAAGATTCGCCGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTACAGTTACTAGAAGAGCTTTCAATTGGTTCCGAATCAACCGACATCGTAGATCGAGCAGAAAATTTGATCCAAATGGCAATGTGCCAGCTCGAGAGCGAATTTCGTCATATCTTAATTCAGAGCACGATCCCTCTCGACGCCGAGCGACTTTATGGTTCGATCCGAAGAGTTCATCTCTCGTTTGCGTCTCATTACAGTGAAATTGATGACGAATTGGAGAGTTTTGGCGAGGAAAGTCGTAGTTCTGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTAATGCGGCTGTTGATCTTTCGGAGATTGCGGATCGTATGATTCGCTCTGGCTACGAAAAGGAGTGTGTTCAAGTCTATAGCATTGTTCGTCGTGATGCTTTAGATGAGTGCTTGATGATTCTTGGCGTCGAACGCCTTAGCATTGAGGAGGTTCAAAAAAGTGATTGGAAATTCTTAGATGAGAAGATGAAGAAATGGATTAAGGCTGTCAAGATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTGTATGATCAGATTTTCACTGGCGCCAATGAATCCAAGGAGGTTTGTTTTAATGAAACAGCAAAAGGGTGTGTAATGCAGTTGTTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGTTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGTGTTTTGCCTGACTTGGAAGCCATGGTTTCTGATGAGTTTTTGATCAGTGAAGCACATGGTGTATTGTGTGGACTGGGTGAAGCAGCCATAGGGACATTTGTTGAGTTTGAGAATGCCATTGAAAGCGAAAATTCGAAGAAAGCAATGCAAAATGCCGAGATTCACCCACTTGTTCGATATGTAATGAATTACGTTAGATTGTTGGTTGATTACAGCAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGTAGAAGACTTGCCAAACAAGAGGGATAACGTCGATAATCTGCAATTGGAAAGTACGTCGTCGCCTTTAGCTCGTAGATTATTAATGCTATTATCATCTTTGGAATCAAATCTTATGGAAAAAGCCAAGCTCTATGAGGATGTTGCAATGCAGTTCATATTTCTCATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAACTGCTTGGCGGTAACTGGCTTCGCAGGCATAGTGGCCAAATTCGCCAATACGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTTCTTAAAAGATGAGGGTATTGGTGGCAGCACAAGCAATGCCTCCAAGGTAGCATTGAAGGAAAAGTTCAAGAATTTCAATGCAAGTTTTGAGGAAATCTGTAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTGCGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAATTAGAGAGCGGAAGGCATTCGGGGAAGTACATAAAGTACACGCCAGATGATTTAGAGAACTCTCTATCAGATTTATTTGAAGGATCACCTGTTGTATCACATCATTTGAGAAGAAAGGGTACTTGA 1959 43.24 MAASNTNVSGDDHDRVLATAQHIVKSLNTPKEVREDMLFILSTFDNRLSSISTMINNDDSNIKNSRLDAAEKVILRWDPNSDQSRRSFNWEDSPDEAAEYLSAVDDILQLLEELSIGSESTDIVDRAENLIQMAMCQLESEFRHILIQSTIPLDAERLYGSIRRVHLSFASHYSEIDDELESFGEESRSSGRFHERGATIGEDSWVDLIHPNAAVDLSEIADRMIRSGYEKECVQVYSIVRRDALDECLMILGVERLSIEEVQKSDWKFLDEKMKKWIKAVKITVRLILEGEKRLYDQIFTGANESKEVCFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPDLEAMVSDEFLISEAHGVLCGLGEAAIGTFVEFENAIESENSKKAMQNAEIHPLVRYVMNYVRLLVDYSKTMNSLLEDEEVEDLPNKRDNVDNLQLESTSSPLARRLLMLLSSLESNLMEKAKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGGNWLRRHSGQIRQYETSYLRASWSKVLSFLKDEGIGGSTSNASKVALKEKFKNFNASFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPDDLENSLSDLFEGSPVVSHHLRRKGT* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30935673 30939340 - CsaV3_1G045240.1 Csa01g03408 517905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03408 652 Pfam Exo70 exocyst complex subunit 275 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa01g03408 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 651 IPR004140 GO:0000145|GO:0006887
Csa01g03408 652 SUPERFAMILY Cullin repeat-like 70 638 IPR016159 -
Csa01g03408 652 Gene3D Exocyst complex component Exo70 73 646 - -
Csa01g03408 652 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03408 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101205970 1253.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00963 Csa-Chr1:5967014 Csa01g03408 Csa-Chr1:30935673 0 dispersed
Csa01g03408 Csa-Chr1:30935673 Csa04g00918 Csa-Chr4:6741979 6.31E-144 dispersed
Csa05g00661 Csa-Chr5:4442429 Csa01g03408 Csa-Chr1:30935673 1.58E-97 dispersed
Csa06g01715 Csa-Chr6:15102299 Csa01g03408 Csa-Chr1:30935673 1.79E-105 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74