Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03408 ATGGCTGCCTCTAACACCAATGTCTCCGGCGACGACCACGATCGGGTCTTGGCCACCGCTCAACACATCGTTAAGAGCCTCAATACCCCTAAAGAGGTTCGTGAGGATATGCTCTTCATTCTCTCCACTTTTGATAATCGTCTTTCCAGTATCAGTACTATGATCAACAATGATGACTCCAACATTAAGAACTCTAGGTTAGACGCCGCCGAAAAGGTGATTCTACGTTGGGACCCTAATTCCGATCAGTCCAGACGGTCCTTTAATTGGGAAGATTCGCCGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTACAGTTACTAGAAGAGCTTTCAATTGGTTCCGAATCAACCGACATCGTAGATCGAGCAGAAAATTTGATCCAAATGGCAATGTGCCAGCTCGAGAGCGAATTTCGTCATATCTTAATTCAGAGCACGATCCCTCTCGACGCCGAGCGACTTTATGGTTCGATCCGAAGAGTTCATCTCTCGTTTGCGTCTCATTACAGTGAAATTGATGACGAATTGGAGAGTTTTGGCGAGGAAAGTCGTAGTTCTGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTAATGCGGCTGTTGATCTTTCGGAGATTGCGGATCGTATGATTCGCTCTGGCTACGAAAAGGAGTGTGTTCAAGTCTATAGCATTGTTCGTCGTGATGCTTTAGATGAGTGCTTGATGATTCTTGGCGTCGAACGCCTTAGCATTGAGGAGGTTCAAAAAAGTGATTGGAAATTCTTAGATGAGAAGATGAAGAAATGGATTAAGGCTGTCAAGATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTGTATGATCAGATTTTCACTGGCGCCAATGAATCCAAGGAGGTTTGTTTTAATGAAACAGCAAAAGGGTGTGTAATGCAGTTGTTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGTTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGTGTTTTGCCTGACTTGGAAGCCATGGTTTCTGATGAGTTTTTGATCAGTGAAGCACATGGTGTATTGTGTGGACTGGGTGAAGCAGCCATAGGGACATTTGTTGAGTTTGAGAATGCCATTGAAAGCGAAAATTCGAAGAAAGCAATGCAAAATGCCGAGATTCACCCACTTGTTCGATATGTAATGAATTACGTTAGATTGTTGGTTGATTACAGCAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGTAGAAGACTTGCCAAACAAGAGGGATAACGTCGATAATCTGCAATTGGAAAGTACGTCGTCGCCTTTAGCTCGTAGATTATTAATGCTATTATCATCTTTGGAATCAAATCTTATGGAAAAAGCCAAGCTCTATGAGGATGTTGCAATGCAGTTCATATTTCTCATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAACTGCTTGGCGGTAACTGGCTTCGCAGGCATAGTGGCCAAATTCGCCAATACGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTTCTTAAAAGATGAGGGTATTGGTGGCAGCACAAGCAATGCCTCCAAGGTAGCATTGAAGGAAAAGTTCAAGAATTTCAATGCAAGTTTTGAGGAAATCTGTAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTGCGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAATTAGAGAGCGGAAGGCATTCGGGGAAGTACATAAAGTACACGCCAGATGATTTAGAGAACTCTCTATCAGATTTATTTGAAGGATCACCTGTTGTATCACATCATTTGAGAAGAAAGGGTACTTGA 1959 43.24 MAASNTNVSGDDHDRVLATAQHIVKSLNTPKEVREDMLFILSTFDNRLSSISTMINNDDSNIKNSRLDAAEKVILRWDPNSDQSRRSFNWEDSPDEAAEYLSAVDDILQLLEELSIGSESTDIVDRAENLIQMAMCQLESEFRHILIQSTIPLDAERLYGSIRRVHLSFASHYSEIDDELESFGEESRSSGRFHERGATIGEDSWVDLIHPNAAVDLSEIADRMIRSGYEKECVQVYSIVRRDALDECLMILGVERLSIEEVQKSDWKFLDEKMKKWIKAVKITVRLILEGEKRLYDQIFTGANESKEVCFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPDLEAMVSDEFLISEAHGVLCGLGEAAIGTFVEFENAIESENSKKAMQNAEIHPLVRYVMNYVRLLVDYSKTMNSLLEDEEVEDLPNKRDNVDNLQLESTSSPLARRLLMLLSSLESNLMEKAKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGGNWLRRHSGQIRQYETSYLRASWSKVLSFLKDEGIGGSTSNASKVALKEKFKNFNASFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPDDLENSLSDLFEGSPVVSHHLRRKGT* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30935673 30939340 - CsaV3_1G045240.1 Csa01g03408 517905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03408 652 Pfam Exo70 exocyst complex subunit 275 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa01g03408 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 651 IPR004140 GO:0000145|GO:0006887
Csa01g03408 652 SUPERFAMILY Cullin repeat-like 70 638 IPR016159 -
Csa01g03408 652 Gene3D Exocyst complex component Exo70 73 646 - -
Csa01g03408 652 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00963 Csa-Chr1:5967014 Csa01g03408 Csa-Chr1:30935673 0 dispersed
Csa01g03408 Csa-Chr1:30935673 Csa04g00918 Csa-Chr4:6741979 6.31E-144 dispersed
Csa05g00661 Csa-Chr5:4442429 Csa01g03408 Csa-Chr1:30935673 1.58E-97 dispersed
Csa06g01715 Csa-Chr6:15102299 Csa01g03408 Csa-Chr1:30935673 1.79E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03408 K07195 - csv:101205970 1253.04