Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03418 ATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCTGAAGACAAAGAAGAACCTGAGGAGACGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAGAGATCAAAAGTGCTACAAAGGGAGCTTCCACGGCCTCCTACTGCGTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTAGCTTTGTTAGAGCATGATAACGCAAA 554 43.86 MLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAX 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31122239 31122792 - CsaV3_1G045340.1 Csa01g03418 517915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03418 185 PANTHER - 3 184 - -
Csa01g03418 185 Pfam pre-mRNA splicing factor component 10 184 IPR021786 -
Csa01g03418 185 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 3 184 - -
Csa01g03418 185 MobiDBLite consensus disorder prediction 79 114 - -
Csa01g03418 185 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03418 Csa-Chr1:31122239 Csa07g02087 Csa-Chr7:20118421 1.86E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03418 K12860 - csv:101205030 331.257