Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03419 | ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTATGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCTCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGACGTTAGTGAGGAAGACAGACCAGTGGAACAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGGACTCCCCAAAGGACGCCGGCTGGAAGGGTGATGCCATAA | 1095 | 44.66 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGRVMP* | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31122926 | 31124232 | - | CsaV3_1G045350.1 | Csa01g03419 | 517916 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03419 | 364 | CDD | SANT_CDC5_II | 55 | 106 | - | - | |
Csa01g03419 | 364 | Gene3D | - | 57 | 113 | - | - | |
Csa01g03419 | 364 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Csa01g03419 | 364 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 359 | - | - | |
Csa01g03419 | 364 | Gene3D | - | 5 | 56 | - | - | |
Csa01g03419 | 364 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Csa01g03419 | 364 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Csa01g03419 | 364 | Coils | Coil | 167 | 187 | - | - | |
Csa01g03419 | 364 | MobiDBLite | consensus disorder prediction | 212 | 239 | - | - | |
Csa01g03419 | 364 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Csa01g03419 | 364 | MobiDBLite | consensus disorder prediction | 341 | 364 | - | - | |
Csa01g03419 | 364 | SMART | sant | 58 | 105 | IPR001005 | - | |
Csa01g03419 | 364 | SMART | sant | 6 | 55 | IPR001005 | - | |
Csa01g03419 | 364 | MobiDBLite | consensus disorder prediction | 110 | 150 | - | - | |
Csa01g03419 | 364 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Csa01g03419 | 364 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Csa01g03419 | 364 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Csa01g03419 | 364 | MobiDBLite | consensus disorder prediction | 222 | 239 | - | - | |
Csa01g03419 | 364 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03419 | Csa-Chr1:31122926 | Csa07g02087 | Csa-Chr7:20118421 | 0 | dispersed | |
Csa01g03419 | Csa-Chr1:31122926 | Csa02g02287 | Csa-Chr2:20417052 | 1.12E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30839 | PF13921 | Myb_DNA-bind_6 | 2.40E-13 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03419 | K12860 | - | csv:101205030 | 706.057 |