Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03419 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTATGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCTCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGACGTTAGTGAGGAAGACAGACCAGTGGAACAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGGACTCCCCAAAGGACGCCGGCTGGAAGGGTGATGCCATAA 1095 44.66 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGRVMP* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31122926 31124232 - CsaV3_1G045350.1 Csa01g03419 517916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03419 364 CDD SANT_CDC5_II 55 106 - -
Csa01g03419 364 Gene3D - 57 113 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 157 176 - -
Csa01g03419 364 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 359 - -
Csa01g03419 364 Gene3D - 5 56 - -
Csa01g03419 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Csa01g03419 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Csa01g03419 364 Coils Coil 167 187 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 212 239 - -
Csa01g03419 364 Pfam Myb-like DNA-binding domain 10 70 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 341 364 - -
Csa01g03419 364 SMART sant 58 105 IPR001005 -
Csa01g03419 364 SMART sant 6 55 IPR001005 -
Csa01g03419 364 MobiDBLite consensus disorder prediction 110 150 - -
Csa01g03419 364 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Csa01g03419 364 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Csa01g03419 364 CDD SANT 10 53 IPR001005 -
Csa01g03419 364 MobiDBLite consensus disorder prediction 222 239 - -
Csa01g03419 364 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03419 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03419 Csa-Chr1:31122926 Csa07g02087 Csa-Chr7:20118421 0 dispersed
Csa01g03419 Csa-Chr1:31122926 Csa02g02287 Csa-Chr2:20417052 1.12E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g604 . . Bda07g01179 . . Bpe09g00664 . . . . . . . Car12g00806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g00972 . . Cpe04g00013 Cpe05g00838 . . . . . . . . . . . . . . . Csa01g03419 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30839 PF13921 Myb_DNA-bind_6 2.40E-13 CL0123 Csa TF