Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03419 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTATGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCTCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGACGTTAGTGAGGAAGACAGACCAGTGGAACAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGGACTCCCCAAAGGACGCCGGCTGGAAGGGTGATGCCATAA 1095 44.66 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGRVMP* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31122926 31124232 - CsaV3_1G045350.1 Csa01g03419 517916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03419 364 CDD SANT_CDC5_II 55 106 - -
Csa01g03419 364 Gene3D - 57 113 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 157 176 - -
Csa01g03419 364 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 359 - -
Csa01g03419 364 Gene3D - 5 56 - -
Csa01g03419 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Csa01g03419 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Csa01g03419 364 Coils Coil 167 187 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 212 239 - -
Csa01g03419 364 Pfam Myb-like DNA-binding domain 10 70 - -
Csa01g03419 364 MobiDBLite consensus disorder prediction 341 364 - -
Csa01g03419 364 SMART sant 58 105 IPR001005 -
Csa01g03419 364 SMART sant 6 55 IPR001005 -
Csa01g03419 364 MobiDBLite consensus disorder prediction 110 150 - -
Csa01g03419 364 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Csa01g03419 364 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Csa01g03419 364 CDD SANT 10 53 IPR001005 -
Csa01g03419 364 MobiDBLite consensus disorder prediction 222 239 - -
Csa01g03419 364 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03419 Csa-Chr1:31122926 Csa07g02087 Csa-Chr7:20118421 0 dispersed
Csa01g03419 Csa-Chr1:31122926 Csa02g02287 Csa-Chr2:20417052 1.12E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30839 PF13921 Myb_DNA-bind_6 2.40E-13 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03419 K12860 - csv:101205030 706.057