Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03451 ATGGACACAACCGATTCAATCACTGCTTTCTCTCATCTTCTTCAACCTCCGGATTTCTCTCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATATGATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAACTCTGTAACTTCCTTCAATGTCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTAAAAACATTGAAACATAAGAACATTATGAAATTCTATACCTCTTGGGTCGATACTGCAAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGCTAACATTAGAGCAGTGAAGCGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAGGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTTGGGACACCAGAGTTCATGGCTCCGGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGTAAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCAAGCATGCGACAATTCGTTGAGAAATGCTTGGCACCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCGAAATTGATGGTTGTGAAAGCAAGTTGAAAATTTCAGATTCTCGGAGAGAACTGGACGATTTTGCTTCCACTATAGTACGCCCTTTCCTTGAACGAGAAAAAAGATTTAGCTCAATTAGTTACAGTTTGGAGGGTTCAGATGAATGGAGGTACCGTTCGGTCCAGAAGGAACCTGATGGGATTGAACTTTTTGAGGACAATGATAATGACCAATTGGTAAGTCTTGATAACAATATTAAGGGGAAAATACGTGAAGATGGCAGCATTGTTTTAAGACTTAGGATTACGGATAAAGAAGGGCTTATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATAGCGGAGCTTGACATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTTCTTCCTTGGTTCCCGAGTGGAAGCCAGGGCCTGGCATAGACGAAACACCTCGCATCTCTTACGACGGTGGCTCTCAAAGCTACAACGCTTGCAATCAACCATCTGATAATATTTTGATAGAGAATAAAGGAAATGGAATCAAACTCTATCAGATTTTAAACTTAAGCACAGATGGGCATGCTTTGGCACACGAACATTTCGAGCAAGAGCAGTTCTCGCTCAAAGCAGATCGACCTACACAACCAAATGTGTCAAGCCAGCACTATCAGCCAGATTCTGTCCTCAACGAAAACCAAGCTCTTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGATAATTACAAGAAAATTGACCAATCACTCACTGTTGGGTATAACAAAGAAAAACTACCAGTTAACAAAGCCACTGTCATTGACACTTCACAAAGAAGCTTATTGGGTTCCCGATCACTGTCCACGGTTTCATCCTATTGCGAAGATAAATTTTCCTCTCAAATTCATTGGGAAATTAGATGGCTGTGGAATTGA 1833 40.21 MDTTDSITAFSHLLQPPDFSHYVEIDPTGRYGRYDEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRANIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLEIDGCESKLKISDSRRELDDFASTIVRPFLEREKRFSSISYSLEGSDEWRYRSVQKEPDGIELFEDNDNDQLVSLDNNIKGKIREDGSIVLRLRITDKEGLIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEISSLVPEWKPGPGIDETPRISYDGGSQSYNACNQPSDNILIENKGNGIKLYQILNLSTDGHALAHEHFEQEQFSLKADRPTQPNVSSQHYQPDSVLNENQALSSHSFRQRHSDDNYKKIDQSLTVGYNKEKLPVNKATVIDTSQRSLLGSRSLSTVSSYCEDKFSSQIHWEIRWLWN* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31514550 31518058 + CsaV3_1G045670.1 Csa01g03451 517948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03451 610 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g03451 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 610 - -
Csa01g03451 610 Gene3D - 376 442 - -
Csa01g03451 610 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Csa01g03451 610 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g03451 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 610 - -
Csa01g03451 610 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Csa01g03451 610 SUPERFAMILY Protein kinase-like (PK-like) 25 289 IPR011009 -
Csa01g03451 610 CDD STKc_WNK 30 289 - -
Csa01g03451 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Csa01g03451 610 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 432 IPR024678 GO:0004674|GO:0005524
Csa01g03451 610 SMART serkin_6 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03451 Csa02g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03451 Csa-Chr1:31514550 Csa02g00334 Csa-Chr2:2295834 0 dispersed
Csa01g03451 Csa-Chr1:31514550 Csa03g00442 Csa-Chr3:3747292 5.02E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77858 PF00069 Pkinase 2.40E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03451 K08867 - csv:101222641 1242.25