Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03456 | ATGGGTGAAGTAGGGAATCAAGAGATGGATAATTTATCCTCGGTAATTCCTCAAACTGATAGTGTGGAACTCGGTAATGTTGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGACTGGTGGTGCAGTTTTGCCGGAGCATCCTCATTTTCAGTCTCGGAGTCGGTGTCAAGAATCAGAGTCACCTGCAGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACAATTAGTGGTTTTGCCCATTGGAACTAAAGCGCCTCTTCCACCTGCGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAAGTTGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGTTTTGCATCTGGAGTGTACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTCGAGCATGAAGCGTCAAGGAGAGAGGCAGTCGAAACTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCTAACAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGTTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAAAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGGGACCATGCCAACAACATAGCTTATATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCGTTTCAAAGAAAAGAAAAGGCCCAGAGCTAGGCTTTGGCCCTGTAGGGAAGGATTCCCCTCTCAATAGTATACCGCAACTTCATCAGGCAAATAATATAATGTCTTCAGGCATGTCTACATCATCTCCCTTCCCGGCTGCTCATGTTGGTAGCCCTGTAGCATCGGGGCCTTCAAAATTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCGGTTTTAGTGGTGTTGACTAGTGAAGTTGCCAAGATCCAAGCAGAACAAAGAAGTGATGAGAAACAGATAAATGATCCACAACAGACTTCTCGTGCTTCATCTAGTGGAGACGGGGTACAACATCAGAAGGCCGAAGAGAAAGCGGCAGATGGTGAGTGTGGAAGTTCAAATCAAAGTGATAGGAGTGTACATGACAGTTCCAATTCAAATAGTTCGGATATGACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGATCTGCTGCCCATGATTGCAACACGTCATCACATGTTCCCGATAGGTCTCTTTCAGAAGTGTACATCGAGCAGGAACGAATTGTGCTGACAAAGTTTCGCGATTGCCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAACTCACTTCTAGAAGTGAAAGCGAAGTGGGGAATCAAAATCAGAGCAACAACTTCACCTCAAATAGTGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTTGCTCTCTCGGCACCCAGAATTCCACCTGCCTGCACTGCAGCTCATCATCCGAATAACGATCTCCCGCTCAAAATTCTTCCCGTACCTAAAAATAGGAAGAGCAAACCACAAATTGACAGAGAAGTGTAG | 1809 | 44.83 | MGEVGNQEMDNLSSVIPQTDSVELGNVVSSDVPAKKLARQLDFTGTGGAVLPEHPHFQSRSRCQESESPAVMVVQSQSQPQSPQQLVVLPIGTKAPLPPARKPDSPKSRSRSNVETKDATPKKQKQCKLCNCKHSRCLKLYCECFASGVYCDGCNCTNCHNNVEHEASRREAVETTLERNPNAFRPKIANSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNIAYIQQAANAAITGAIGSSGYACLPVSKKRKGPELGFGPVGKDSPLNSIPQLHQANNIMSSGMSTSSPFPAAHVGSPVASGPSKFSFRSLLADLIQPNDLKELCSVLVVLTSEVAKIQAEQRSDEKQINDPQQTSRASSSGDGVQHQKAEEKAADGECGSSNQSDRSVHDSSNSNSSDMTRARPMSPGTLALMCDEQDTMFMGAGLADGSAAHDCNTSSHVPDRSLSEVYIEQERIVLTKFRDCLNKLITLGEIKETKLTSRSESEVGNQNQSNNFTSNSGCQQRSISNGVVKNVALSAPRIPPACTAAHHPNNDLPLKILPVPKNRKSKPQIDREV* | 603 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31559807 | 31566177 | - | CsaV3_1G045720.1 | Csa01g03456 | 517953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 571 | 602 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 422 | 448 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 395 | 409 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 45 | 118 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 383 | 451 | - | - | |
Csa01g03456 | 602 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 99 | 550 | - | - | |
Csa01g03456 | 602 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 29 | 91 | - | - | |
Csa01g03456 | 602 | ProSiteProfiles | CRC domain profile. | 126 | 250 | IPR005172 | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 104 | 118 | - | - | |
Csa01g03456 | 602 | PANTHER | TESMIN/TSO1-RELATED | 99 | 550 | IPR028307 | - | |
Csa01g03456 | 602 | PANTHER | TESMIN/TSO1-RELATED | 29 | 91 | IPR028307 | - | |
Csa01g03456 | 602 | SMART | CXC_2 | 210 | 251 | IPR033467 | - | |
Csa01g03456 | 602 | SMART | CXC_2 | 125 | 165 | IPR033467 | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 62 | 88 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 525 | 547 | - | - | |
Csa01g03456 | 602 | MobiDBLite | consensus disorder prediction | 528 | 547 | - | - | |
Csa01g03456 | 602 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 213 | 247 | IPR005172 | - | |
Csa01g03456 | 602 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 128 | 162 | IPR005172 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03456 | Csa-Chr1:31559807 | Csa02g00117 | Csa-Chr2:818710 | 0 | dispersed | |
Csa01g03456 | Csa-Chr1:31559807 | Csa02g01139 | Csa-Chr2:11132046 | 5.53E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30842 | PF03638 | TCR | 3.20E-12 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03456 | - | - | csv:101222405 | 1144.41 |