Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03456 ATGGGTGAAGTAGGGAATCAAGAGATGGATAATTTATCCTCGGTAATTCCTCAAACTGATAGTGTGGAACTCGGTAATGTTGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGACTGGTGGTGCAGTTTTGCCGGAGCATCCTCATTTTCAGTCTCGGAGTCGGTGTCAAGAATCAGAGTCACCTGCAGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACAATTAGTGGTTTTGCCCATTGGAACTAAAGCGCCTCTTCCACCTGCGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAAGTTGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGTTTTGCATCTGGAGTGTACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTCGAGCATGAAGCGTCAAGGAGAGAGGCAGTCGAAACTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCTAACAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGTTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAAAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGGGACCATGCCAACAACATAGCTTATATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCGTTTCAAAGAAAAGAAAAGGCCCAGAGCTAGGCTTTGGCCCTGTAGGGAAGGATTCCCCTCTCAATAGTATACCGCAACTTCATCAGGCAAATAATATAATGTCTTCAGGCATGTCTACATCATCTCCCTTCCCGGCTGCTCATGTTGGTAGCCCTGTAGCATCGGGGCCTTCAAAATTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCGGTTTTAGTGGTGTTGACTAGTGAAGTTGCCAAGATCCAAGCAGAACAAAGAAGTGATGAGAAACAGATAAATGATCCACAACAGACTTCTCGTGCTTCATCTAGTGGAGACGGGGTACAACATCAGAAGGCCGAAGAGAAAGCGGCAGATGGTGAGTGTGGAAGTTCAAATCAAAGTGATAGGAGTGTACATGACAGTTCCAATTCAAATAGTTCGGATATGACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGATCTGCTGCCCATGATTGCAACACGTCATCACATGTTCCCGATAGGTCTCTTTCAGAAGTGTACATCGAGCAGGAACGAATTGTGCTGACAAAGTTTCGCGATTGCCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAACTCACTTCTAGAAGTGAAAGCGAAGTGGGGAATCAAAATCAGAGCAACAACTTCACCTCAAATAGTGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTTGCTCTCTCGGCACCCAGAATTCCACCTGCCTGCACTGCAGCTCATCATCCGAATAACGATCTCCCGCTCAAAATTCTTCCCGTACCTAAAAATAGGAAGAGCAAACCACAAATTGACAGAGAAGTGTAG 1809 44.83 MGEVGNQEMDNLSSVIPQTDSVELGNVVSSDVPAKKLARQLDFTGTGGAVLPEHPHFQSRSRCQESESPAVMVVQSQSQPQSPQQLVVLPIGTKAPLPPARKPDSPKSRSRSNVETKDATPKKQKQCKLCNCKHSRCLKLYCECFASGVYCDGCNCTNCHNNVEHEASRREAVETTLERNPNAFRPKIANSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNIAYIQQAANAAITGAIGSSGYACLPVSKKRKGPELGFGPVGKDSPLNSIPQLHQANNIMSSGMSTSSPFPAAHVGSPVASGPSKFSFRSLLADLIQPNDLKELCSVLVVLTSEVAKIQAEQRSDEKQINDPQQTSRASSSGDGVQHQKAEEKAADGECGSSNQSDRSVHDSSNSNSSDMTRARPMSPGTLALMCDEQDTMFMGAGLADGSAAHDCNTSSHVPDRSLSEVYIEQERIVLTKFRDCLNKLITLGEIKETKLTSRSESEVGNQNQSNNFTSNSGCQQRSISNGVVKNVALSAPRIPPACTAAHHPNNDLPLKILPVPKNRKSKPQIDREV* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31559807 31566177 - CsaV3_1G045720.1 Csa01g03456 517953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03456 602 MobiDBLite consensus disorder prediction 571 602 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 1 30 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 422 448 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 395 409 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 45 118 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 383 451 - -
Csa01g03456 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 99 550 - -
Csa01g03456 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 91 - -
Csa01g03456 602 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Csa01g03456 602 MobiDBLite consensus disorder prediction 104 118 - -
Csa01g03456 602 PANTHER TESMIN/TSO1-RELATED 99 550 IPR028307 -
Csa01g03456 602 PANTHER TESMIN/TSO1-RELATED 29 91 IPR028307 -
Csa01g03456 602 SMART CXC_2 210 251 IPR033467 -
Csa01g03456 602 SMART CXC_2 125 165 IPR033467 -
Csa01g03456 602 MobiDBLite consensus disorder prediction 62 88 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 7 26 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 525 547 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 528 547 - -
Csa01g03456 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Csa01g03456 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 128 162 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03456 Csa-Chr1:31559807 Csa02g00117 Csa-Chr2:818710 0 dispersed
Csa01g03456 Csa-Chr1:31559807 Csa02g01139 Csa-Chr2:11132046 5.53E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30842 PF03638 TCR 3.20E-12 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03456 - - csv:101222405 1144.41