Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03456 ATGGGTGAAGTAGGGAATCAAGAGATGGATAATTTATCCTCGGTAATTCCTCAAACTGATAGTGTGGAACTCGGTAATGTTGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGACTGGTGGTGCAGTTTTGCCGGAGCATCCTCATTTTCAGTCTCGGAGTCGGTGTCAAGAATCAGAGTCACCTGCAGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACAATTAGTGGTTTTGCCCATTGGAACTAAAGCGCCTCTTCCACCTGCGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAAGTTGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGTTTTGCATCTGGAGTGTACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTCGAGCATGAAGCGTCAAGGAGAGAGGCAGTCGAAACTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCTAACAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGTTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAAAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGGGACCATGCCAACAACATAGCTTATATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCGTTTCAAAGAAAAGAAAAGGCCCAGAGCTAGGCTTTGGCCCTGTAGGGAAGGATTCCCCTCTCAATAGTATACCGCAACTTCATCAGGCAAATAATATAATGTCTTCAGGCATGTCTACATCATCTCCCTTCCCGGCTGCTCATGTTGGTAGCCCTGTAGCATCGGGGCCTTCAAAATTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCGGTTTTAGTGGTGTTGACTAGTGAAGTTGCCAAGATCCAAGCAGAACAAAGAAGTGATGAGAAACAGATAAATGATCCACAACAGACTTCTCGTGCTTCATCTAGTGGAGACGGGGTACAACATCAGAAGGCCGAAGAGAAAGCGGCAGATGGTGAGTGTGGAAGTTCAAATCAAAGTGATAGGAGTGTACATGACAGTTCCAATTCAAATAGTTCGGATATGACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGATCTGCTGCCCATGATTGCAACACGTCATCACATGTTCCCGATAGGTCTCTTTCAGAAGTGTACATCGAGCAGGAACGAATTGTGCTGACAAAGTTTCGCGATTGCCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAACTCACTTCTAGAAGTGAAAGCGAAGTGGGGAATCAAAATCAGAGCAACAACTTCACCTCAAATAGTGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTTGCTCTCTCGGCACCCAGAATTCCACCTGCCTGCACTGCAGCTCATCATCCGAATAACGATCTCCCGCTCAAAATTCTTCCCGTACCTAAAAATAGGAAGAGCAAACCACAAATTGACAGAGAAGTGTAG 1809 44.83 MGEVGNQEMDNLSSVIPQTDSVELGNVVSSDVPAKKLARQLDFTGTGGAVLPEHPHFQSRSRCQESESPAVMVVQSQSQPQSPQQLVVLPIGTKAPLPPARKPDSPKSRSRSNVETKDATPKKQKQCKLCNCKHSRCLKLYCECFASGVYCDGCNCTNCHNNVEHEASRREAVETTLERNPNAFRPKIANSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNIAYIQQAANAAITGAIGSSGYACLPVSKKRKGPELGFGPVGKDSPLNSIPQLHQANNIMSSGMSTSSPFPAAHVGSPVASGPSKFSFRSLLADLIQPNDLKELCSVLVVLTSEVAKIQAEQRSDEKQINDPQQTSRASSSGDGVQHQKAEEKAADGECGSSNQSDRSVHDSSNSNSSDMTRARPMSPGTLALMCDEQDTMFMGAGLADGSAAHDCNTSSHVPDRSLSEVYIEQERIVLTKFRDCLNKLITLGEIKETKLTSRSESEVGNQNQSNNFTSNSGCQQRSISNGVVKNVALSAPRIPPACTAAHHPNNDLPLKILPVPKNRKSKPQIDREV* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31559807 31566177 - CsaV3_1G045720.1 Csa01g03456 517953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03456 602 MobiDBLite consensus disorder prediction 571 602 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 1 30 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 422 448 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 395 409 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 45 118 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 383 451 - -
Csa01g03456 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 99 550 - -
Csa01g03456 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 91 - -
Csa01g03456 602 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Csa01g03456 602 MobiDBLite consensus disorder prediction 104 118 - -
Csa01g03456 602 PANTHER TESMIN/TSO1-RELATED 99 550 IPR028307 -
Csa01g03456 602 PANTHER TESMIN/TSO1-RELATED 29 91 IPR028307 -
Csa01g03456 602 SMART CXC_2 210 251 IPR033467 -
Csa01g03456 602 SMART CXC_2 125 165 IPR033467 -
Csa01g03456 602 MobiDBLite consensus disorder prediction 62 88 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 7 26 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 525 547 - -
Csa01g03456 602 MobiDBLite consensus disorder prediction 528 547 - -
Csa01g03456 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Csa01g03456 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 128 162 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03456 - - - csv:101222405 1144.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03456 Csa-Chr1:31559807 Csa02g00117 Csa-Chr2:818710 0 dispersed
Csa01g03456 Csa-Chr1:31559807 Csa02g01139 Csa-Chr2:11132046 5.53E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g409 Blo10g00335 Blo11g00476 Bda07g01226 . Bpe11g01351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00828 . . . . . . . . . . . Sed11g0270 . . . . . . . . Bhi06g01733 Tan08g0483 Cmetu02g0773 . . . . . . . . . . . Lsi11g00482 Csa01g03456 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00117 . 31 518 CPP Transcription Factor Family AT2G20110 56.6 8.1e-143 504.2
Csa02g00117 . 29 525 CPP Transcription Factor Family AT4G29000 56.8 4.7e-152 535.0
Csa01g03456 . 17 555 CPP Transcription Factor Family AT4G29000 51.5 7.6e-142 501.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30842 PF03638 TCR 3.20E-12 No_clan Csa TF