Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03493 | ATGGCCAAAACCAAACCTCCCAAGAAAGATTTGGACTCCTACACCATCAGAGCTACCAACAAGATCGTTAGAGCTGGAGATTGTGTTCTCATGCGCCCATCCGAAACTAGTAAGCTCCCCTATGTAGCGCTTGTTGAGAAGATCGAAGCTGATAACCGTAACAACATTAAAGTTCGAGTCAGGTGGTATTATCGACCAGAGGAGTCGATTGGGGGTCGGAGGCAGTTCCATGGAGCTAAGGAACTCTTCTTGTCTGACCATTATGACGTCCAGAGTGCTCACACCATTGAAGGGAAGTGCATTGTTCATTCCTTTAAGAACTACACTAAGCTTGATAATGTTGGTGCTGAGGATTATTATTCTAGATTTGAGTACAAGGCTGCTACTGGAGCTTTCACGCCTGACCGAGTTGCTGTCTATTGCAAATGTGAGATGCCTTACAACCCAGACGATCTCATGGTGCAGTGTGAGGGCTGCAAGGACTGGTACCATCCTGCTTGTGTAAGTATGACCATCGAGGAAGCAAAAAAATTGGACCATTTTGTGTGTTCTGAATGTGGATCTGATGGGGACATCAAGAAAAATGAGAATGCATTTTCAGCATCACCAGTGGCTGATGGCAAGGTAATAATGAATAAAAGATGGGGAAAATCAACTTCCCTTATTCCGAGAAAACTTCTACTCGTGGCTGTAATCTCATCAGTTTCTTTCAATTCTGTTTCTCTAATGAGTTCAACTAACGTAAAGTTCTTAAATGGTTGTAGCTCGAGTCAAAGCGACGGAAGAGATAACCATTTGAGGTGGAATTGTTTGTTGTATTCAACCATGGAAGATGAGGAGAGTTCAATTGTTATTTATGTAGAAAAGAGAGAAATTTTCCTAGTTGTAATGGAAGATGATGGTGGTGATGAACTAAGAAGCAACAAAGAAATGTTGTTAATAGAAGATTCACACAAGAAGGTTCTAGAAAACAGTATAAAAAACTACAGAAAGCTGCATAGCTTCAAGAAAATTTTGAATGGTTTTGCAGTCCACACAACACCATCAGAAGCTTCAAAGCTCAGAGAAGCCAATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACGACTTATACCCCTGAGTTTTTAGGGTTAGTGAAGAATAATAATGATTATAAATATAATTATAGTGGTGGTGGGGATGGGATTTTGATTGGGTTTGTGGATTCTGGGATTTATCCAACACATCCAAGTTTTAGCAATAACTTTGGTAAAGAAGATGATGATGAGTTGGTTTGTGAAGAAGGTCCTTTATTTCCAAAAGGTTGTTGCAATGGGAAGATAGTGAGTGCTAGGTTTTTCTCTGCTGGGGCTCAGGCTGCTGCAGTGCTTAATTCTTCTATTGATTTCCTATCTCCATTTGATGCTGAAGGCCATGGAAGCCACGTCGCATCCATAGCTGCTGGGAATGCAGAAGTTCCAGTTATTGTCGATGGTTTCTTCTACGGTTTGGCCACTGGGATTGCGCCACATGCCCGAATTGCTGTGTACAAGGCAGTGTATCCAACCGTAGCAACTCTAACAGATGTAATTTCAGCAATAGATCAAGCAGTGATTGATGGAGTTGATATATTAGCATTATCAGTTGGACCAAATGAACCATCAGATGTGGGATTTACCTTCCTAAGCATATATGACATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCCGCCGGAAATAATGGTCCGGCACGGGCAACTGTTGTCTCTTATAGCCCTTGGGCCATCGGCGTCGCAGCTTCCGGCACCGACAGAGTTTATTCAACCTCACTTCTTCTTGGCAATGGCCAAAAAGTTGGAGGAGTAGGAATGTCTGGACCCAGTTTAGGGAGTGAGTTTTTCCTACATAAGTTGGTATTGGCTAAGGATGCAACGAAGCAAAATGAAACAAATTATAACGACATACCAAGTTACATTGAAGAATGCCAACATCCTGAAGCTTTTGACCCAAATATTGTCCAAAACAGCATAGTCCTTTGCTCTTTCTCACAAGGATTCCTGAATGGAACCTCCTCTCTTGCAGCCATCATTCACACTGCAAAACAACTCAAGTTCATGGGTTTTGTTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCAGAGCCTATCCCTTTCAGAGTTCCAGGCATTCTCGTCCCCAGCGTATCAGATACTCAGGTAATACTGAAGTACTATGAAGAAAATACATGCAAGGATGAAAGAGGAATGGTTAGAGAATTTAAAGGGAAAGCAGGGATTGGAGAAGGAAGAATTGCTTCATTTGGGAACCAAGCACCCACAGTTAGCAGATTTTCATCAAGAGGACCAGATTACATAAACATAAATAGGAGTTTAGCTGATGTTCTAAAGCCAGATATTCTTGCACCTGGTCACCAAATTTGGGCTGCTTGGAGCCCTCTCAGTGCCTCAGAACCACTATTAAAGGGATACCATTTTGCACTGATGTCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAATATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCTATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCTGAGGGATTCAACCTTCATGCTTTATATCCTTCTACTCCCTTCGATTTCGGCGCTGGGCTCGTTTCTCCGTCCAACGCTTTGGACCCCGGACTCGTCTTCCCAACAGAATATGAAGACAATATAAACTTCTTGTGCTCTTTACCTGGGGTTGATCCTGCCGTCGTCAAAAGCGCCACCGGAGGACAATGTAATGCCTCTATCTCACACTCACACCCTGCAGATCTGAACCTTCCTTCAATCACAATATCATCACTGGTTGGGCATCAGGTGGTGCAGAGAAGAGTGAAGAATGTAGGAGGAAAAGTGGAGACATATGTATGGTCAGTGATCCCACCAAACGGGACAACAGTCAACATCAATCCGCCGGTGTTCACTGTAGCTGCCGAAGAAGTCCAAAACTTGGAAATACAGATCATTGCCACACATAAAACGGATCATTTTACCTTTGGGGAGATTATTTTGACAGGAAGTTTAAACCATATTGCAAGAATCCCTTTATCAATTTTGGTTGTTTCTGCATCCTGA | 3186 | 42.5 | MAKTKPPKKDLDSYTIRATNKIVRAGDCVLMRPSETSKLPYVALVEKIEADNRNNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLDNVGAEDYYSRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVSMTIEEAKKLDHFVCSECGSDGDIKKNENAFSASPVADGKVIMNKRWGKSTSLIPRKLLLVAVISSVSFNSVSLMSSTNVKFLNGCSSSQSDGRDNHLRWNCLLYSTMEDEESSIVIYVEKREIFLVVMEDDGGDELRSNKEMLLIEDSHKKVLENSIKNYRKLHSFKKILNGFAVHTTPSEASKLREANGVKLVELDRGVRKMTTYTPEFLGLVKNNNDYKYNYSGGGDGILIGFVDSGIYPTHPSFSNNFGKEDDDELVCEEGPLFPKGCCNGKIVSARFFSAGAQAAAVLNSSIDFLSPFDAEGHGSHVASIAAGNAEVPVIVDGFFYGLATGIAPHARIAVYKAVYPTVATLTDVISAIDQAVIDGVDILALSVGPNEPSDVGFTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYSTSLLLGNGQKVGGVGMSGPSLGSEFFLHKLVLAKDATKQNETNYNDIPSYIEECQHPEAFDPNIVQNSIVLCSFSQGFLNGTSSLAAIIHTAKQLKFMGFVLIANPNYGDFIAEPIPFRVPGILVPSVSDTQVILKYYEENTCKDERGMVREFKGKAGIGEGRIASFGNQAPTVSRFSSRGPDYININRSLADVLKPDILAPGHQIWAAWSPLSASEPLLKGYHFALMSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHALYPSTPFDFGAGLVSPSNALDPGLVFPTEYEDNINFLCSLPGVDPAVVKSATGGQCNASISHSHPADLNLPSITISSLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPVFTVAAEEVQNLEIQIIATHKTDHFTFGEIILTGSLNHIARIPLSILVVSAS* | 1062 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31876017 | 31893189 | + | CsaV3_1G046090.1 | Csa01g03493 | 517990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03493 | 1061 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT2.6 | 313 | 1057 | - | - | |
Csa01g03493 | 1061 | SUPERFAMILY | FYVE/PHD zinc finger | 132 | 187 | IPR011011 | - | |
Csa01g03493 | 1061 | ProSiteProfiles | BAH domain profile. | 21 | 136 | IPR001025 | GO:0003682 | |
Csa01g03493 | 1061 | ProSiteProfiles | Zinc finger PHD-type profile. | 138 | 189 | IPR019787 | - | |
Csa01g03493 | 1061 | Pfam | Fibronectin type-III domain | 961 | 1055 | IPR041469 | - | |
Csa01g03493 | 1061 | PRINTS | Subtilisin serine protease family (S8) signature | 397 | 416 | IPR015500 | - | |
Csa01g03493 | 1061 | PRINTS | Subtilisin serine protease family (S8) signature | 839 | 855 | IPR015500 | - | |
Csa01g03493 | 1061 | PRINTS | Subtilisin serine protease family (S8) signature | 472 | 485 | IPR015500 | - | |
Csa01g03493 | 1061 | SMART | BAH_4 | 21 | 136 | IPR001025 | GO:0003682 | |
Csa01g03493 | 1061 | Pfam | Subtilase family | 397 | 879 | IPR000209 | GO:0006508|GO:0008236 | |
Csa01g03493 | 1061 | Gene3D | Peptidase S8/S53 domain | 399 | 926 | IPR036852 | GO:0004252|GO:0006508 | |
Csa01g03493 | 1061 | Pfam | BAH domain | 23 | 135 | IPR001025 | GO:0003682 | |
Csa01g03493 | 1061 | CDD | Peptidases_S8_3 | 369 | 876 | IPR034197 | - | |
Csa01g03493 | 1061 | Pfam | Peptidase inhibitor I9 | 293 | 370 | IPR010259 | - | |
Csa01g03493 | 1061 | ProSitePatterns | Zinc finger PHD-type signature. | 141 | 186 | IPR019786 | - | |
Csa01g03493 | 1061 | Gene3D | - | 931 | 1057 | - | - | |
Csa01g03493 | 1061 | SUPERFAMILY | Subtilisin-like | 372 | 918 | IPR036852 | GO:0004252|GO:0006508 | |
Csa01g03493 | 1061 | Gene3D | - | 606 | 777 | - | - | |
Csa01g03493 | 1061 | ProSitePatterns | Serine proteases, subtilase family, histidine active site. | 476 | 486 | IPR022398 | - | |
Csa01g03493 | 1061 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 313 | 1057 | IPR045051 | - | |
Csa01g03493 | 1061 | CDD | BAH_BAHCC1 | 22 | 156 | - | - | |
Csa01g03493 | 1061 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 840 | 850 | IPR023828 | - | |
Csa01g03493 | 1061 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 377 | 914 | - | - | |
Csa01g03493 | 1061 | CDD | PA_subtilisin_like | 612 | 752 | - | - | |
Csa01g03493 | 1061 | ProSitePatterns | Serine proteases, subtilase family, aspartic acid active site. | 402 | 413 | IPR023827 | - | |
Csa01g03493 | 1061 | SMART | PHD_3 | 140 | 187 | IPR001965 | - | |
Csa01g03493 | 1061 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 275 | 370 | IPR037045 | - | |
Csa01g03493 | 1061 | Pfam | PHD-finger | 140 | 187 | IPR019787 | - | |
Csa01g03493 | 1061 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 202 | IPR013083 | - | |
Csa01g03493 | 1061 | Gene3D | - | 1 | 132 | IPR043151 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03493 | Csa-Chr1:31876017 | Csa02g00662 | Csa-Chr2:5043791 | 0 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30843 | PF00082 | Peptidase_S8 | 7.80E-44 | No_clan | Csa | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03493 | - | - | csv:101204623 | 1536.93 |