Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03493 ATGGCCAAAACCAAACCTCCCAAGAAAGATTTGGACTCCTACACCATCAGAGCTACCAACAAGATCGTTAGAGCTGGAGATTGTGTTCTCATGCGCCCATCCGAAACTAGTAAGCTCCCCTATGTAGCGCTTGTTGAGAAGATCGAAGCTGATAACCGTAACAACATTAAAGTTCGAGTCAGGTGGTATTATCGACCAGAGGAGTCGATTGGGGGTCGGAGGCAGTTCCATGGAGCTAAGGAACTCTTCTTGTCTGACCATTATGACGTCCAGAGTGCTCACACCATTGAAGGGAAGTGCATTGTTCATTCCTTTAAGAACTACACTAAGCTTGATAATGTTGGTGCTGAGGATTATTATTCTAGATTTGAGTACAAGGCTGCTACTGGAGCTTTCACGCCTGACCGAGTTGCTGTCTATTGCAAATGTGAGATGCCTTACAACCCAGACGATCTCATGGTGCAGTGTGAGGGCTGCAAGGACTGGTACCATCCTGCTTGTGTAAGTATGACCATCGAGGAAGCAAAAAAATTGGACCATTTTGTGTGTTCTGAATGTGGATCTGATGGGGACATCAAGAAAAATGAGAATGCATTTTCAGCATCACCAGTGGCTGATGGCAAGGTAATAATGAATAAAAGATGGGGAAAATCAACTTCCCTTATTCCGAGAAAACTTCTACTCGTGGCTGTAATCTCATCAGTTTCTTTCAATTCTGTTTCTCTAATGAGTTCAACTAACGTAAAGTTCTTAAATGGTTGTAGCTCGAGTCAAAGCGACGGAAGAGATAACCATTTGAGGTGGAATTGTTTGTTGTATTCAACCATGGAAGATGAGGAGAGTTCAATTGTTATTTATGTAGAAAAGAGAGAAATTTTCCTAGTTGTAATGGAAGATGATGGTGGTGATGAACTAAGAAGCAACAAAGAAATGTTGTTAATAGAAGATTCACACAAGAAGGTTCTAGAAAACAGTATAAAAAACTACAGAAAGCTGCATAGCTTCAAGAAAATTTTGAATGGTTTTGCAGTCCACACAACACCATCAGAAGCTTCAAAGCTCAGAGAAGCCAATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACGACTTATACCCCTGAGTTTTTAGGGTTAGTGAAGAATAATAATGATTATAAATATAATTATAGTGGTGGTGGGGATGGGATTTTGATTGGGTTTGTGGATTCTGGGATTTATCCAACACATCCAAGTTTTAGCAATAACTTTGGTAAAGAAGATGATGATGAGTTGGTTTGTGAAGAAGGTCCTTTATTTCCAAAAGGTTGTTGCAATGGGAAGATAGTGAGTGCTAGGTTTTTCTCTGCTGGGGCTCAGGCTGCTGCAGTGCTTAATTCTTCTATTGATTTCCTATCTCCATTTGATGCTGAAGGCCATGGAAGCCACGTCGCATCCATAGCTGCTGGGAATGCAGAAGTTCCAGTTATTGTCGATGGTTTCTTCTACGGTTTGGCCACTGGGATTGCGCCACATGCCCGAATTGCTGTGTACAAGGCAGTGTATCCAACCGTAGCAACTCTAACAGATGTAATTTCAGCAATAGATCAAGCAGTGATTGATGGAGTTGATATATTAGCATTATCAGTTGGACCAAATGAACCATCAGATGTGGGATTTACCTTCCTAAGCATATATGACATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCCGCCGGAAATAATGGTCCGGCACGGGCAACTGTTGTCTCTTATAGCCCTTGGGCCATCGGCGTCGCAGCTTCCGGCACCGACAGAGTTTATTCAACCTCACTTCTTCTTGGCAATGGCCAAAAAGTTGGAGGAGTAGGAATGTCTGGACCCAGTTTAGGGAGTGAGTTTTTCCTACATAAGTTGGTATTGGCTAAGGATGCAACGAAGCAAAATGAAACAAATTATAACGACATACCAAGTTACATTGAAGAATGCCAACATCCTGAAGCTTTTGACCCAAATATTGTCCAAAACAGCATAGTCCTTTGCTCTTTCTCACAAGGATTCCTGAATGGAACCTCCTCTCTTGCAGCCATCATTCACACTGCAAAACAACTCAAGTTCATGGGTTTTGTTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCAGAGCCTATCCCTTTCAGAGTTCCAGGCATTCTCGTCCCCAGCGTATCAGATACTCAGGTAATACTGAAGTACTATGAAGAAAATACATGCAAGGATGAAAGAGGAATGGTTAGAGAATTTAAAGGGAAAGCAGGGATTGGAGAAGGAAGAATTGCTTCATTTGGGAACCAAGCACCCACAGTTAGCAGATTTTCATCAAGAGGACCAGATTACATAAACATAAATAGGAGTTTAGCTGATGTTCTAAAGCCAGATATTCTTGCACCTGGTCACCAAATTTGGGCTGCTTGGAGCCCTCTCAGTGCCTCAGAACCACTATTAAAGGGATACCATTTTGCACTGATGTCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAATATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCTATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCTGAGGGATTCAACCTTCATGCTTTATATCCTTCTACTCCCTTCGATTTCGGCGCTGGGCTCGTTTCTCCGTCCAACGCTTTGGACCCCGGACTCGTCTTCCCAACAGAATATGAAGACAATATAAACTTCTTGTGCTCTTTACCTGGGGTTGATCCTGCCGTCGTCAAAAGCGCCACCGGAGGACAATGTAATGCCTCTATCTCACACTCACACCCTGCAGATCTGAACCTTCCTTCAATCACAATATCATCACTGGTTGGGCATCAGGTGGTGCAGAGAAGAGTGAAGAATGTAGGAGGAAAAGTGGAGACATATGTATGGTCAGTGATCCCACCAAACGGGACAACAGTCAACATCAATCCGCCGGTGTTCACTGTAGCTGCCGAAGAAGTCCAAAACTTGGAAATACAGATCATTGCCACACATAAAACGGATCATTTTACCTTTGGGGAGATTATTTTGACAGGAAGTTTAAACCATATTGCAAGAATCCCTTTATCAATTTTGGTTGTTTCTGCATCCTGA 3186 42.5 MAKTKPPKKDLDSYTIRATNKIVRAGDCVLMRPSETSKLPYVALVEKIEADNRNNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLDNVGAEDYYSRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVSMTIEEAKKLDHFVCSECGSDGDIKKNENAFSASPVADGKVIMNKRWGKSTSLIPRKLLLVAVISSVSFNSVSLMSSTNVKFLNGCSSSQSDGRDNHLRWNCLLYSTMEDEESSIVIYVEKREIFLVVMEDDGGDELRSNKEMLLIEDSHKKVLENSIKNYRKLHSFKKILNGFAVHTTPSEASKLREANGVKLVELDRGVRKMTTYTPEFLGLVKNNNDYKYNYSGGGDGILIGFVDSGIYPTHPSFSNNFGKEDDDELVCEEGPLFPKGCCNGKIVSARFFSAGAQAAAVLNSSIDFLSPFDAEGHGSHVASIAAGNAEVPVIVDGFFYGLATGIAPHARIAVYKAVYPTVATLTDVISAIDQAVIDGVDILALSVGPNEPSDVGFTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYSTSLLLGNGQKVGGVGMSGPSLGSEFFLHKLVLAKDATKQNETNYNDIPSYIEECQHPEAFDPNIVQNSIVLCSFSQGFLNGTSSLAAIIHTAKQLKFMGFVLIANPNYGDFIAEPIPFRVPGILVPSVSDTQVILKYYEENTCKDERGMVREFKGKAGIGEGRIASFGNQAPTVSRFSSRGPDYININRSLADVLKPDILAPGHQIWAAWSPLSASEPLLKGYHFALMSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHALYPSTPFDFGAGLVSPSNALDPGLVFPTEYEDNINFLCSLPGVDPAVVKSATGGQCNASISHSHPADLNLPSITISSLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPVFTVAAEEVQNLEIQIIATHKTDHFTFGEIILTGSLNHIARIPLSILVVSAS* 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31876017 31893189 + CsaV3_1G046090.1 Csa01g03493 517990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03493 1061 PANTHER SUBTILISIN-LIKE PROTEASE SBT2.6 313 1057 - -
Csa01g03493 1061 SUPERFAMILY FYVE/PHD zinc finger 132 187 IPR011011 -
Csa01g03493 1061 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Csa01g03493 1061 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Csa01g03493 1061 Pfam Fibronectin type-III domain 961 1055 IPR041469 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 397 416 IPR015500 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 839 855 IPR015500 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 472 485 IPR015500 -
Csa01g03493 1061 SMART BAH_4 21 136 IPR001025 GO:0003682
Csa01g03493 1061 Pfam Subtilase family 397 879 IPR000209 GO:0006508|GO:0008236
Csa01g03493 1061 Gene3D Peptidase S8/S53 domain 399 926 IPR036852 GO:0004252|GO:0006508
Csa01g03493 1061 Pfam BAH domain 23 135 IPR001025 GO:0003682
Csa01g03493 1061 CDD Peptidases_S8_3 369 876 IPR034197 -
Csa01g03493 1061 Pfam Peptidase inhibitor I9 293 370 IPR010259 -
Csa01g03493 1061 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Csa01g03493 1061 Gene3D - 931 1057 - -
Csa01g03493 1061 SUPERFAMILY Subtilisin-like 372 918 IPR036852 GO:0004252|GO:0006508
Csa01g03493 1061 Gene3D - 606 777 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, histidine active site. 476 486 IPR022398 -
Csa01g03493 1061 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 313 1057 IPR045051 -
Csa01g03493 1061 CDD BAH_BAHCC1 22 156 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, serine active site. 840 850 IPR023828 -
Csa01g03493 1061 ProSiteProfiles Serine proteases, subtilase domain profile. 377 914 - -
Csa01g03493 1061 CDD PA_subtilisin_like 612 752 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 402 413 IPR023827 -
Csa01g03493 1061 SMART PHD_3 140 187 IPR001965 -
Csa01g03493 1061 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 275 370 IPR037045 -
Csa01g03493 1061 Pfam PHD-finger 140 187 IPR019787 -
Csa01g03493 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
Csa01g03493 1061 Gene3D - 1 132 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03493 - - - csv:101204623 1536.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03493 Csa-Chr1:31876017 Csa02g00662 Csa-Chr2:5043791 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01054 . 23 767 Subtilisin-like Serine Gene Family AT1G01900 57.2 8.6e-231 797.0
Csa05g01053 . 18 770 Subtilisin-like Serine Gene Family AT1G01900 55.0 4.0e-228 788.1
Csa03g02634 . 12 767 Subtilisin-like Serine Gene Family AT1G04110 67.4 7.1e-310 1059.7
Csa03g04296 . 30 768 Subtilisin-like Serine Gene Family AT1G20150 54.0 7.6e-227 783.9
Csa03g04296 . 6 512 Subtilisin-like Serine Gene Family AT1G20160 61.3 1.1e-171 600.1
Csa06g03883 . 9 836 Subtilisin-like Serine Gene Family AT1G30600 64.7 9.6e-313 1069.3
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT1G32940 51.4 3.5e-194 675.2
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT1G32950 50.4 7.8e-194 674.1
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT1G32960 51.6 6.2e-205 711.1
Csa01g03493 . 314 1058 Subtilisin-like Serine Gene Family AT1G62340 56.9 3.3e-244 841.6
Csa07g00232 . 5 771 Subtilisin-like Serine Gene Family AT2G04160 63.6 1.8e-284 975.3
Csa03g00392 . 1459 2201 Subtilisin-like Serine Gene Family AT2G04160 58.8 7.2e-254 873.6
Csa03g00390 . 64 822 Subtilisin-like Serine Gene Family AT2G04160 57.9 2.7e-253 871.7
Csa01g01526 . 1 748 Subtilisin-like Serine Gene Family AT2G04160 54.7 1.5e-235 812.8
Csa01g01525 . 11 770 Subtilisin-like Serine Gene Family AT2G04160 51.0 4.5e-216 748.0
Csa01g02995 . 23 764 Subtilisin-like Serine Gene Family AT2G05920 72.8 0.0e+00 1095.5
Csa06g02998 . 24 760 Subtilisin-like Serine Gene Family AT2G05920 55.3 2.4e-230 795.4
Csa02g01905 . 34 769 Subtilisin-like Serine Gene Family AT2G05920 55.7 2.4e-222 768.8
Csa03g01651 . 61 806 Subtilisin-like Serine Gene Family AT2G05920 51.5 8.4e-215 743.8
Csa07g02348 . 31 762 Subtilisin-like Serine Gene Family AT2G05920 53.2 1.0e-212 736.9
Csa02g01383 . 30 763 Subtilisin-like Serine Gene Family AT2G05920 50.3 2.7e-205 712.2
Csa07g02314 . 26 768 Subtilisin-like Serine Gene Family AT2G05920 51.5 4.3e-203 704.9
Csa05g01053 . 72 768 Subtilisin-like Serine Gene Family AT2G05920 50.1 3.8e-183 638.6
Csa02g00662 CCT 21 817 Subtilisin-like Serine Gene Family AT2G19170 83.1 0.0e+00 1355.5
Csa07g02348 . 1 765 Subtilisin-like Serine Gene Family AT3G14067 64.2 1.6e-285 978.8
Csa06g02998 . 9 760 Subtilisin-like Serine Gene Family AT3G14067 53.7 1.3e-223 773.1
Csa01g02995 . 22 760 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.9e-217 752.7
Csa02g01905 . 20 769 Subtilisin-like Serine Gene Family AT3G14067 50.7 2.4e-209 725.7
Csa07g02314 . 8 774 Subtilisin-like Serine Gene Family AT3G14067 50.6 1.4e-204 709.9
Csa07g02314 . 29 776 Subtilisin-like Serine Gene Family AT3G14240 77.2 0.0e+00 1199.5
Csa02g01383 . 31 772 Subtilisin-like Serine Gene Family AT3G14240 57.9 3.4e-243 838.2
Csa06g02998 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 53.0 9.8e-219 756.9
Csa03g01651 . 62 802 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-212 736.9
Csa01g02995 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 51.5 3.7e-210 728.4
Csa07g02348 . 30 763 Subtilisin-like Serine Gene Family AT3G14240 50.7 2.7e-208 722.2
Csa02g01905 . 36 768 Subtilisin-like Serine Gene Family AT3G14240 50.7 3.6e-205 711.8
Csa05g01060 . 9 567 Subtilisin-like Serine Gene Family AT4G00230 59.9 1.9e-193 672.5
Csa05g01055 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 57.1 3.5e-184 641.7
Csa03g03404 . 1 328 Subtilisin-like Serine Gene Family AT4G00230 50.3 5.8e-86 315.5
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT4G10510 51.1 2.1e-199 692.6
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT4G10520 51.2 6.9e-201 697.6
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT4G10540 51.0 1.0e-207 720.3
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT4G10550 50.5 1.1e-198 690.3
Csa06g03883 . 12 836 Subtilisin-like Serine Gene Family AT4G20430 67.8 0.0e+00 1131.3
Csa01g01136 . 1 284 Subtilisin-like Serine Gene Family AT4G21320 77.2 1.4e-130 462.6
Csa01g01453 . 1 721 Subtilisin-like Serine Gene Family AT4G26330 56.1 2.8e-231 798.5
Csa02g00662 CCT 9 817 Subtilisin-like Serine Gene Family AT4G30020 82.0 0.0e+00 1342.4
Csa02g01383 . 30 772 Subtilisin-like Serine Gene Family AT4G34980 75.0 0.0e+00 1145.6
Csa07g02314 . 16 776 Subtilisin-like Serine Gene Family AT4G34980 54.2 8.4e-231 797.0
Csa03g01651 . 35 805 Subtilisin-like Serine Gene Family AT4G34980 50.3 7.4e-211 730.7
Csa06g02998 . 25 756 Subtilisin-like Serine Gene Family AT4G34980 51.4 3.8e-207 718.4
Csa01g02995 . 12 756 Subtilisin-like Serine Gene Family AT4G34980 50.2 1.0e-204 710.3
Csa05g01060 . 8 565 Subtilisin-like Serine Gene Family AT5G03620 51.5 6.3e-146 514.6
Csa05g00754 . 688 1223 Subtilisin-like Serine Gene Family AT5G03620 50.4 4.1e-145 511.9
Csa05g02711 . 31 560 Subtilisin-like Serine Gene Family AT5G03620 50.3 3.7e-138 488.8
Csa03g03404 . 2 318 Subtilisin-like Serine Gene Family AT5G03620 59.0 3.2e-105 379.4
Csa06g02669 . 1 309 Subtilisin-like Serine Gene Family AT5G03620 57.2 1.3e-95 347.4
Csa01g01728 . 1 772 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1290.8
Csa06g03883 . 34 610 Subtilisin-like Serine Gene Family AT5G44530 70.1 2.3e-242 835.1
Csa06g03738 . 84 789 Subtilisin-like Serine Gene Family AT5G45640 51.2 2.5e-195 679.1
Csa06g03738 . 39 789 Subtilisin-like Serine Gene Family AT5G45650 57.4 6.7e-247 850.5
Csa03g01651 . 46 804 Subtilisin-like Serine Gene Family AT5G51750 72.5 0.0e+00 1153.3
Csa06g02998 . 21 760 Subtilisin-like Serine Gene Family AT5G51750 53.0 5.6e-230 794.3
Csa02g01905 . 12 769 Subtilisin-like Serine Gene Family AT5G51750 51.8 1.6e-224 776.2
Csa01g02995 . 1 760 Subtilisin-like Serine Gene Family AT5G51750 50.6 6.9e-220 760.8
Csa05g02711 . 28 733 Subtilisin-like Serine Gene Family AT5G58830 50.1 3.5e-178 622.1
Csa05g02710 . 1 123 Subtilisin-like Serine Gene Family AT5G59130 58.4 1.8e-36 151.4
Csa05g02711 . 35 732 Subtilisin-like Serine Gene Family AT5G59190 50.3 3.0e-187 652.1
Csa05g00114 . 36 736 Subtilisin-like Serine Gene Family AT5G59190 50.4 5.2e-187 651.4
Csa07g00232 . 12 771 Subtilisin-like Serine Gene Family AT5G59810 59.7 9.1e-265 909.8
Csa01g01526 . 8 751 Subtilisin-like Serine Gene Family AT5G59810 61.3 2.7e-261 898.3
Csa03g00392 . 1459 2204 Subtilisin-like Serine Gene Family AT5G59810 60.8 3.0e-260 894.8
Csa01g01525 . 15 771 Subtilisin-like Serine Gene Family AT5G59810 57.0 4.0e-244 841.3
Csa03g00390 . 69 822 Subtilisin-like Serine Gene Family AT5G59810 54.6 1.1e-228 790.0
Csa03g00396 . 36 720 Subtilisin-like Serine Gene Family AT5G59810 50.9 1.5e-203 706.4
Csa06g02998 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1098.6
Csa02g01905 . 10 771 Subtilisin-like Serine Gene Family AT5G67360 64.8 4.2e-291 997.3
Csa01g02995 . 11 761 Subtilisin-like Serine Gene Family AT5G67360 55.8 4.0e-233 804.7
Csa03g01651 . 62 803 Subtilisin-like Serine Gene Family AT5G67360 54.2 7.3e-227 783.9
Csa07g02348 . 9 762 Subtilisin-like Serine Gene Family AT5G67360 53.9 5.6e-219 757.7
Csa07g02314 . 7 771 Subtilisin-like Serine Gene Family AT5G67360 52.2 1.8e-212 736.1
Csa02g01383 . 6 766 Subtilisin-like Serine Gene Family AT5G67360 51.1 2.6e-208 722.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013012 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30843 PF00082 Peptidase_S8 7.80E-44 No_clan Csa TR