Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03493 ATGGCCAAAACCAAACCTCCCAAGAAAGATTTGGACTCCTACACCATCAGAGCTACCAACAAGATCGTTAGAGCTGGAGATTGTGTTCTCATGCGCCCATCCGAAACTAGTAAGCTCCCCTATGTAGCGCTTGTTGAGAAGATCGAAGCTGATAACCGTAACAACATTAAAGTTCGAGTCAGGTGGTATTATCGACCAGAGGAGTCGATTGGGGGTCGGAGGCAGTTCCATGGAGCTAAGGAACTCTTCTTGTCTGACCATTATGACGTCCAGAGTGCTCACACCATTGAAGGGAAGTGCATTGTTCATTCCTTTAAGAACTACACTAAGCTTGATAATGTTGGTGCTGAGGATTATTATTCTAGATTTGAGTACAAGGCTGCTACTGGAGCTTTCACGCCTGACCGAGTTGCTGTCTATTGCAAATGTGAGATGCCTTACAACCCAGACGATCTCATGGTGCAGTGTGAGGGCTGCAAGGACTGGTACCATCCTGCTTGTGTAAGTATGACCATCGAGGAAGCAAAAAAATTGGACCATTTTGTGTGTTCTGAATGTGGATCTGATGGGGACATCAAGAAAAATGAGAATGCATTTTCAGCATCACCAGTGGCTGATGGCAAGGTAATAATGAATAAAAGATGGGGAAAATCAACTTCCCTTATTCCGAGAAAACTTCTACTCGTGGCTGTAATCTCATCAGTTTCTTTCAATTCTGTTTCTCTAATGAGTTCAACTAACGTAAAGTTCTTAAATGGTTGTAGCTCGAGTCAAAGCGACGGAAGAGATAACCATTTGAGGTGGAATTGTTTGTTGTATTCAACCATGGAAGATGAGGAGAGTTCAATTGTTATTTATGTAGAAAAGAGAGAAATTTTCCTAGTTGTAATGGAAGATGATGGTGGTGATGAACTAAGAAGCAACAAAGAAATGTTGTTAATAGAAGATTCACACAAGAAGGTTCTAGAAAACAGTATAAAAAACTACAGAAAGCTGCATAGCTTCAAGAAAATTTTGAATGGTTTTGCAGTCCACACAACACCATCAGAAGCTTCAAAGCTCAGAGAAGCCAATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACGACTTATACCCCTGAGTTTTTAGGGTTAGTGAAGAATAATAATGATTATAAATATAATTATAGTGGTGGTGGGGATGGGATTTTGATTGGGTTTGTGGATTCTGGGATTTATCCAACACATCCAAGTTTTAGCAATAACTTTGGTAAAGAAGATGATGATGAGTTGGTTTGTGAAGAAGGTCCTTTATTTCCAAAAGGTTGTTGCAATGGGAAGATAGTGAGTGCTAGGTTTTTCTCTGCTGGGGCTCAGGCTGCTGCAGTGCTTAATTCTTCTATTGATTTCCTATCTCCATTTGATGCTGAAGGCCATGGAAGCCACGTCGCATCCATAGCTGCTGGGAATGCAGAAGTTCCAGTTATTGTCGATGGTTTCTTCTACGGTTTGGCCACTGGGATTGCGCCACATGCCCGAATTGCTGTGTACAAGGCAGTGTATCCAACCGTAGCAACTCTAACAGATGTAATTTCAGCAATAGATCAAGCAGTGATTGATGGAGTTGATATATTAGCATTATCAGTTGGACCAAATGAACCATCAGATGTGGGATTTACCTTCCTAAGCATATATGACATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCCGCCGGAAATAATGGTCCGGCACGGGCAACTGTTGTCTCTTATAGCCCTTGGGCCATCGGCGTCGCAGCTTCCGGCACCGACAGAGTTTATTCAACCTCACTTCTTCTTGGCAATGGCCAAAAAGTTGGAGGAGTAGGAATGTCTGGACCCAGTTTAGGGAGTGAGTTTTTCCTACATAAGTTGGTATTGGCTAAGGATGCAACGAAGCAAAATGAAACAAATTATAACGACATACCAAGTTACATTGAAGAATGCCAACATCCTGAAGCTTTTGACCCAAATATTGTCCAAAACAGCATAGTCCTTTGCTCTTTCTCACAAGGATTCCTGAATGGAACCTCCTCTCTTGCAGCCATCATTCACACTGCAAAACAACTCAAGTTCATGGGTTTTGTTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCAGAGCCTATCCCTTTCAGAGTTCCAGGCATTCTCGTCCCCAGCGTATCAGATACTCAGGTAATACTGAAGTACTATGAAGAAAATACATGCAAGGATGAAAGAGGAATGGTTAGAGAATTTAAAGGGAAAGCAGGGATTGGAGAAGGAAGAATTGCTTCATTTGGGAACCAAGCACCCACAGTTAGCAGATTTTCATCAAGAGGACCAGATTACATAAACATAAATAGGAGTTTAGCTGATGTTCTAAAGCCAGATATTCTTGCACCTGGTCACCAAATTTGGGCTGCTTGGAGCCCTCTCAGTGCCTCAGAACCACTATTAAAGGGATACCATTTTGCACTGATGTCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAATATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCTATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCTGAGGGATTCAACCTTCATGCTTTATATCCTTCTACTCCCTTCGATTTCGGCGCTGGGCTCGTTTCTCCGTCCAACGCTTTGGACCCCGGACTCGTCTTCCCAACAGAATATGAAGACAATATAAACTTCTTGTGCTCTTTACCTGGGGTTGATCCTGCCGTCGTCAAAAGCGCCACCGGAGGACAATGTAATGCCTCTATCTCACACTCACACCCTGCAGATCTGAACCTTCCTTCAATCACAATATCATCACTGGTTGGGCATCAGGTGGTGCAGAGAAGAGTGAAGAATGTAGGAGGAAAAGTGGAGACATATGTATGGTCAGTGATCCCACCAAACGGGACAACAGTCAACATCAATCCGCCGGTGTTCACTGTAGCTGCCGAAGAAGTCCAAAACTTGGAAATACAGATCATTGCCACACATAAAACGGATCATTTTACCTTTGGGGAGATTATTTTGACAGGAAGTTTAAACCATATTGCAAGAATCCCTTTATCAATTTTGGTTGTTTCTGCATCCTGA 3186 42.5 MAKTKPPKKDLDSYTIRATNKIVRAGDCVLMRPSETSKLPYVALVEKIEADNRNNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLDNVGAEDYYSRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVSMTIEEAKKLDHFVCSECGSDGDIKKNENAFSASPVADGKVIMNKRWGKSTSLIPRKLLLVAVISSVSFNSVSLMSSTNVKFLNGCSSSQSDGRDNHLRWNCLLYSTMEDEESSIVIYVEKREIFLVVMEDDGGDELRSNKEMLLIEDSHKKVLENSIKNYRKLHSFKKILNGFAVHTTPSEASKLREANGVKLVELDRGVRKMTTYTPEFLGLVKNNNDYKYNYSGGGDGILIGFVDSGIYPTHPSFSNNFGKEDDDELVCEEGPLFPKGCCNGKIVSARFFSAGAQAAAVLNSSIDFLSPFDAEGHGSHVASIAAGNAEVPVIVDGFFYGLATGIAPHARIAVYKAVYPTVATLTDVISAIDQAVIDGVDILALSVGPNEPSDVGFTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYSTSLLLGNGQKVGGVGMSGPSLGSEFFLHKLVLAKDATKQNETNYNDIPSYIEECQHPEAFDPNIVQNSIVLCSFSQGFLNGTSSLAAIIHTAKQLKFMGFVLIANPNYGDFIAEPIPFRVPGILVPSVSDTQVILKYYEENTCKDERGMVREFKGKAGIGEGRIASFGNQAPTVSRFSSRGPDYININRSLADVLKPDILAPGHQIWAAWSPLSASEPLLKGYHFALMSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHALYPSTPFDFGAGLVSPSNALDPGLVFPTEYEDNINFLCSLPGVDPAVVKSATGGQCNASISHSHPADLNLPSITISSLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPVFTVAAEEVQNLEIQIIATHKTDHFTFGEIILTGSLNHIARIPLSILVVSAS* 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31876017 31893189 + CsaV3_1G046090.1 Csa01g03493 517990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03493 1061 PANTHER SUBTILISIN-LIKE PROTEASE SBT2.6 313 1057 - -
Csa01g03493 1061 SUPERFAMILY FYVE/PHD zinc finger 132 187 IPR011011 -
Csa01g03493 1061 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Csa01g03493 1061 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Csa01g03493 1061 Pfam Fibronectin type-III domain 961 1055 IPR041469 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 397 416 IPR015500 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 839 855 IPR015500 -
Csa01g03493 1061 PRINTS Subtilisin serine protease family (S8) signature 472 485 IPR015500 -
Csa01g03493 1061 SMART BAH_4 21 136 IPR001025 GO:0003682
Csa01g03493 1061 Pfam Subtilase family 397 879 IPR000209 GO:0006508|GO:0008236
Csa01g03493 1061 Gene3D Peptidase S8/S53 domain 399 926 IPR036852 GO:0004252|GO:0006508
Csa01g03493 1061 Pfam BAH domain 23 135 IPR001025 GO:0003682
Csa01g03493 1061 CDD Peptidases_S8_3 369 876 IPR034197 -
Csa01g03493 1061 Pfam Peptidase inhibitor I9 293 370 IPR010259 -
Csa01g03493 1061 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Csa01g03493 1061 Gene3D - 931 1057 - -
Csa01g03493 1061 SUPERFAMILY Subtilisin-like 372 918 IPR036852 GO:0004252|GO:0006508
Csa01g03493 1061 Gene3D - 606 777 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, histidine active site. 476 486 IPR022398 -
Csa01g03493 1061 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 313 1057 IPR045051 -
Csa01g03493 1061 CDD BAH_BAHCC1 22 156 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, serine active site. 840 850 IPR023828 -
Csa01g03493 1061 ProSiteProfiles Serine proteases, subtilase domain profile. 377 914 - -
Csa01g03493 1061 CDD PA_subtilisin_like 612 752 - -
Csa01g03493 1061 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 402 413 IPR023827 -
Csa01g03493 1061 SMART PHD_3 140 187 IPR001965 -
Csa01g03493 1061 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 275 370 IPR037045 -
Csa01g03493 1061 Pfam PHD-finger 140 187 IPR019787 -
Csa01g03493 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
Csa01g03493 1061 Gene3D - 1 132 IPR043151 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03493 Csa-Chr1:31876017 Csa02g00662 Csa-Chr2:5043791 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30843 PF00082 Peptidase_S8 7.80E-44 No_clan Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03493 - - csv:101204623 1536.93