Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03495 | ATGGCTTTCCGGGCCTTTTTCTTGCTCTTCTTCTTCTTCATCTTTTGTTCTATTCCATTTCTTCGTGCTCATACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCATTGGACAGTCCTCCTCAGCTCACTGGTTGGATTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCCGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTTTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAGTATTCATGACGCAGTTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAATTGGTAATCTTCCTTATTCCCTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTCGAAACCTTGGACCTTTCCTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCCAATGTTTCTTCCCTGTTTTTTCAGAACAACCGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAGTTTCATTTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGCGGTGGCACCCATACTGCACCAAGTTCTGAGGGCAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATCGTTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCTTCCAGAAGAGAAAACGAAAGAACATTGGCCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGCGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCAAAGAATGGATCAGTCAAAAGAATAAAAGCCCCTATTACTGCGACTTCTTACACTGTTGCTTCGCTTCAAGCTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCACTTGGCCGTGTTTACAAAGCTGAGTTTCCTAATGGGAAGACAATGGCGATTAAGAAAATCGATAATTCAGCGCTGTCACTTCAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAGCATGGTCAGCGTCTTTTAGTTTATGAGTTCATTGGACATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAATATATTGCTTGATGAAGATCTCAATCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTCGCCTTGTCAGGAATATACACCGTCAAGAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGAGTGAGATCAGAGCAGTCACTCGTTAGATGGGCGACCCCTCAACTTCATGATATCGATGCCTTAGCAAAAATGGTTGATCCTACTTTGAATGGAATGTACCCTGCGAAATCTCTGTCACGCTTTGCGGACATCATTGCGCTCTGTGTTCAGCCTGAACCCGAGTTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTCTAGTGCAAAGAGCCAGTGTGGTAAAAAGGCATTCAAGTGATGAGTCGGGATTCAGCTACAAAACACCCGAGCATGATGCAGTTGAGTTGCCATTTTGA | 2136 | 44.01 | MAFRAFFLLFFFFIFCSIPFLRAHTDASDVQALQVMYTSLDSPPQLTGWIVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNSIHDAVPYQLPPNLTSLNMAKNSLIGNLPYSLSTMASLNYLNMSHNLLSQVIGDVFTNLTTLETLDLSFNNFTGDLPKSLGTLSNVSSLFFQNNRLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVESFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSGGTHTAPSSEGSSSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCFQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKAPITATSYTVASLQAATNSFSQECIVGEGSLGRVYKAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF* | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31905787 | 31911658 | - | CsaV3_1G046110.1 | Csa01g03495 | 517992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03495 | 711 | Pfam | Leucine rich repeat | 115 | 175 | IPR001611 | GO:0005515 | |
Csa01g03495 | 711 | SUPERFAMILY | L domain-like | 25 | 231 | - | - | |
Csa01g03495 | 711 | SUPERFAMILY | Protein kinase-like (PK-like) | 384 | 677 | IPR011009 | - | |
Csa01g03495 | 711 | Pfam | Protein tyrosine and serine/threonine kinase | 408 | 677 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g03495 | 711 | MobiDBLite | consensus disorder prediction | 241 | 286 | - | - | |
Csa01g03495 | 711 | MobiDBLite | consensus disorder prediction | 264 | 286 | - | - | |
Csa01g03495 | 711 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 | 20 | 706 | - | - | |
Csa01g03495 | 711 | Gene3D | Phosphorylase Kinase; domain 1 | 364 | 480 | - | - | |
Csa01g03495 | 711 | ProSiteProfiles | Protein kinase domain profile. | 403 | 680 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g03495 | 711 | PANTHER | OS01G0253100 PROTEIN | 20 | 706 | IPR045271 | GO:0004714|GO:0006468 | |
Csa01g03495 | 711 | CDD | STKc_IRAK | 409 | 680 | - | - | |
Csa01g03495 | 711 | Gene3D | Transferase(Phosphotransferase) domain 1 | 482 | 704 | - | - | |
Csa01g03495 | 711 | MobiDBLite | consensus disorder prediction | 244 | 263 | - | - | |
Csa01g03495 | 711 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
Csa01g03495 | 711 | Gene3D | Ribonuclease Inhibitor | 26 | 253 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03495 | Csa-Chr1:31905787 | Csa07g02300 | Csa-Chr7:21374921 | 0 | dispersed | |
Csa05g00543 | Csa-Chr5:3495154 | Csa01g03495 | Csa-Chr1:31905787 | 2.88E-66 | dispersed | |
Csa01g03495 | Csa-Chr1:31905787 | Csa03g02807 | Csa-Chr3:26882602 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77859 | PF00069 | Pkinase | 3.60E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03495 | - | - | csv:101216091 | 1360.13 |