Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03495 ATGGCTTTCCGGGCCTTTTTCTTGCTCTTCTTCTTCTTCATCTTTTGTTCTATTCCATTTCTTCGTGCTCATACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCATTGGACAGTCCTCCTCAGCTCACTGGTTGGATTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCCGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTTTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAGTATTCATGACGCAGTTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAATTGGTAATCTTCCTTATTCCCTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTCGAAACCTTGGACCTTTCCTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCCAATGTTTCTTCCCTGTTTTTTCAGAACAACCGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAGTTTCATTTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGCGGTGGCACCCATACTGCACCAAGTTCTGAGGGCAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATCGTTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCTTCCAGAAGAGAAAACGAAAGAACATTGGCCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGCGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCAAAGAATGGATCAGTCAAAAGAATAAAAGCCCCTATTACTGCGACTTCTTACACTGTTGCTTCGCTTCAAGCTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCACTTGGCCGTGTTTACAAAGCTGAGTTTCCTAATGGGAAGACAATGGCGATTAAGAAAATCGATAATTCAGCGCTGTCACTTCAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAGCATGGTCAGCGTCTTTTAGTTTATGAGTTCATTGGACATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAATATATTGCTTGATGAAGATCTCAATCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTCGCCTTGTCAGGAATATACACCGTCAAGAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGAGTGAGATCAGAGCAGTCACTCGTTAGATGGGCGACCCCTCAACTTCATGATATCGATGCCTTAGCAAAAATGGTTGATCCTACTTTGAATGGAATGTACCCTGCGAAATCTCTGTCACGCTTTGCGGACATCATTGCGCTCTGTGTTCAGCCTGAACCCGAGTTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTCTAGTGCAAAGAGCCAGTGTGGTAAAAAGGCATTCAAGTGATGAGTCGGGATTCAGCTACAAAACACCCGAGCATGATGCAGTTGAGTTGCCATTTTGA 2136 44.01 MAFRAFFLLFFFFIFCSIPFLRAHTDASDVQALQVMYTSLDSPPQLTGWIVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNSIHDAVPYQLPPNLTSLNMAKNSLIGNLPYSLSTMASLNYLNMSHNLLSQVIGDVFTNLTTLETLDLSFNNFTGDLPKSLGTLSNVSSLFFQNNRLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVESFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSGGTHTAPSSEGSSSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCFQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKAPITATSYTVASLQAATNSFSQECIVGEGSLGRVYKAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31905787 31911658 - CsaV3_1G046110.1 Csa01g03495 517992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03495 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Csa01g03495 711 SUPERFAMILY L domain-like 25 231 - -
Csa01g03495 711 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Csa01g03495 711 Pfam Protein tyrosine and serine/threonine kinase 408 677 IPR001245 GO:0004672|GO:0006468
Csa01g03495 711 MobiDBLite consensus disorder prediction 241 286 - -
Csa01g03495 711 MobiDBLite consensus disorder prediction 264 286 - -
Csa01g03495 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 20 706 - -
Csa01g03495 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Csa01g03495 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g03495 711 PANTHER OS01G0253100 PROTEIN 20 706 IPR045271 GO:0004714|GO:0006468
Csa01g03495 711 CDD STKc_IRAK 409 680 - -
Csa01g03495 711 Gene3D Transferase(Phosphotransferase) domain 1 482 704 - -
Csa01g03495 711 MobiDBLite consensus disorder prediction 244 263 - -
Csa01g03495 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Csa01g03495 711 Gene3D Ribonuclease Inhibitor 26 253 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03495 Csa-Chr1:31905787 Csa07g02300 Csa-Chr7:21374921 0 dispersed
Csa05g00543 Csa-Chr5:3495154 Csa01g03495 Csa-Chr1:31905787 2.88E-66 dispersed
Csa01g03495 Csa-Chr1:31905787 Csa03g02807 Csa-Chr3:26882602 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77859 PF00069 Pkinase 3.60E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03495 - - csv:101216091 1360.13