Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03540 ATGGCCGCAAAAGATGCAGAGGAAGTCTTGGACGTCCAGTCGGTCGTTGAAGCTGTAGTTGCAAATGAAGACGCTGCTGATGTTCCTAGCTACGAAGTAGAAAGCCTTTGCATGCGATGCGGTGAAAACGGGATAACAAGATTTTTATTAACTTTAATTCCGCACTTCAGAAAGATTTTGTTGTCAGCCTTTGAATGTCCACATTGCGGTGAGAGGAACAATGAAGTTCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAGGCGACCAGAAGATGCTCAATCGACAAGTGGTTAAATCTGAATCTGCCATTATTAAGATTCCAGAATTGGATTTTGAAATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGTTGAAGGTATATTGGTACGAGCTGTAGATGGATTGGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCATTTTCTTCTGAAACTGAAAGCTTGTGCTAAGGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTCTTATGAGCGTACTCCAGAACAACAAGCATTGTTAGGGTATTATGTTGAACCATCACAACCAGCAGAAGCTCAGGGTGGAGCATCAACAGGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGTGGCACATGGATCTGTAGGAGCAAAGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTTTTTCGTTACACTGCACCAGAAGAAGTGATGACATTCCCATCAACGTGTGGAGCTTGTGCAGTTAGCTGTGAGACTCGAATGTTTGTAACCAAAATTCCGTACTTTCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTATGTGTGAAGAATGTTAGAGATCTCAGTCGAGATGTAATAAAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGAGTTGGAGCTGACTAGTGGTACTCTTGGGGGAATTGTTACAACTGTTGAAGGCTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAAAAGAAACAAGTGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAGCAGCCTTGGACTCTAATCCTTGATGATGCCTTAGCAAATTCGTTTATTGCACCGGTGACTGATGATATGAAAGATGACCATCAGTTAACATTCGAGGAGTACGAGCGGTCGTGGGAACAAAACGAGGAACTCGGTTTGAACGACATGGACACCTCGGCTGCTGATGCCGCTTATGAGTGA 1476 43.77 MAAKDAEEVLDVQSVVEAVVANEDAADVPSYEVESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYCLEVHAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAVDGLEALQEERRKVDPQTAEAIDHFLLKLKACAKGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKSYERTPEQQALLGYYVEPSQPAEAQGGASTGGVDASNQVRGVAHGSVGAKAGHRAIAQSNSAEIAEAFFRYTAPEEVMTFPSTCGACAVSCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVRDLSRDVIKSDTASVKVPDLELELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENKRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTFEEYERSWEQNEELGLNDMDTSAADAAYE* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32487961 32509791 + CsaV3_1G046560.1 Csa01g03540 518037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03540 491 Gene3D ZPR1, A/B domain 81 222 IPR042451 -
Csa01g03540 491 Gene3D ZPR1, A/B domain 336 478 IPR042451 -
Csa01g03540 491 PANTHER ZINC FINGER PROTEIN ZPR1 3 490 IPR040141 -
Csa01g03540 491 SMART zpr1 290 450 IPR004457 GO:0008270
Csa01g03540 491 SMART zpr1 35 195 IPR004457 GO:0008270
Csa01g03540 491 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 490 - -
Csa01g03540 491 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 37 218 IPR004457 GO:0008270
Csa01g03540 491 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 291 482 IPR004457 GO:0008270
Csa01g03540 491 Gene3D ZPR1, zinc finger domain 280 335 IPR042452 -
Csa01g03540 491 Gene3D ZPR1, zinc finger domain 27 80 IPR042452 -
Csa01g03540 491 Pfam ZPR1 zinc-finger domain 290 448 IPR004457 GO:0008270
Csa01g03540 491 Pfam ZPR1 zinc-finger domain 35 194 IPR004457 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03540 K06874 - csv:101208000 963.755