Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g03551 ATGAAGACCGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTCAGAAGACGGTGTGGGGAAGAATGTGTGTTTGCTCCATACTTTCCCGCCGACCAACCTCATAAGTTCGCCAACGTTCATAAGGTTTTCGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGCTGCCAATTCATCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCGTCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGAGGAATCAATGTGGTGA 513 50.68 MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32657337 32662418 - CsaV3_1G046670.1 Csa01g03551 518048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g03551 170 MobiDBLite consensus disorder prediction 129 148 - -
Csa01g03551 170 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Csa01g03551 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 161 - -
Csa01g03551 170 Coils Coil 94 121 - -
Csa01g03551 170 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Csa01g03551 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 5 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03551 Csa-Chr1:32657337 Csa05g00849 Csa-Chr5:6402429 3.51E-60 dispersed
Csa03g01679 Csa-Chr3:12579300 Csa01g03551 Csa-Chr1:32657337 2.08E-40 dispersed
Csa01g03551 Csa-Chr1:32657337 Csa06g01169 Csa-Chr6:9817253 4.76E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30844 PF03195 LOB 2.60E-43 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g03551 - - csv:101202930 310.457