Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g03551 | ATGAAGACCGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTCAGAAGACGGTGTGGGGAAGAATGTGTGTTTGCTCCATACTTTCCCGCCGACCAACCTCATAAGTTCGCCAACGTTCATAAGGTTTTCGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGCTGCCAATTCATCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCGTCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGAGGAATCAATGTGGTGA | 513 | 50.68 | MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW* | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32657337 | 32662418 | - | CsaV3_1G046670.1 | Csa01g03551 | 518048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g03551 | 170 | MobiDBLite | consensus disorder prediction | 129 | 148 | - | - | |
Csa01g03551 | 170 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
Csa01g03551 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 161 | - | - | |
Csa01g03551 | 170 | Coils | Coil | 94 | 121 | - | - | |
Csa01g03551 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Csa01g03551 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 5 | 161 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03551 | Csa-Chr1:32657337 | Csa05g00849 | Csa-Chr5:6402429 | 3.51E-60 | dispersed | |
Csa03g01679 | Csa-Chr3:12579300 | Csa01g03551 | Csa-Chr1:32657337 | 2.08E-40 | dispersed | |
Csa01g03551 | Csa-Chr1:32657337 | Csa06g01169 | Csa-Chr6:9817253 | 4.76E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30844 | PF03195 | LOB | 2.60E-43 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g03551 | - | - | csv:101202930 | 310.457 |