Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g00004 | GGAGGCGAGGTTGTTGAAGATCACATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATCGGGTTCGATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTTTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGACAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAATTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGCCAGATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAGACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTCGGCAATTCTACTACTGAAGATGGGACTGTGGGCATATGTGATGGCTTTAGTGAAACACAAACAGAGTCTCAGGTGTGTGCTATGCAATCCAGAAGGGGGAATGCAACTATACCCAACTCACAGGTTGATGACGGTGAATGGGAGCTGTATCCACAAGTAACTGCTCTATGCATTGGAAATGCTAAATACTTTGGCGGTGGTATGAAAATTGTGCAAATGCCGATCCTTCCAACAGGAGTCTAG | 774 | 43.15 | GGEVVEDHMKQKVHFTVECHGGIPRSTDVHSTYVSSHRVRSCLEDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTNYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQVCAMQSRRGNATIPNSQVDDGEWELYPQVTALCIGNAKYFGGGMKIVQMPILPTGV* | 258 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 118042 | 121257 | - | CsaV3_2G000040.1 | Csa02g00004 | 518061 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g00004 | 257 | Pfam | twin BRCT domain | 73 | 134 | IPR001357 | - | |
| Csa02g00004 | 257 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 1 | 141 | - | - | |
| Csa02g00004 | 257 | CDD | BRCT | 72 | 138 | - | - | |
| Csa02g00004 | 257 | ProSiteProfiles | BRCT domain profile. | 69 | 139 | IPR001357 | - | |
| Csa02g00004 | 257 | SUPERFAMILY | BRCT domain | 34 | 141 | IPR036420 | - | |
| Csa02g00004 | 257 | Gene3D | BRCT domain | 68 | 145 | IPR036420 | - | |
| Csa02g00004 | 257 | SMART | BRCT_7 | 66 | 142 | IPR001357 | - | |
| Csa02g00004 | 257 | Gene3D | BRCT domain | 1 | 62 | IPR036420 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g00004 | Csa-Chr2:118042 | Csa04g01777 | Csa-Chr4:17422137 | 1.87E-35 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g00004 | K10728 | - | csv:116401640 | 475.707 |