Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00006 ATGAAAGCTCCCTCAAATGGGTTTCTAGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTAGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTACACAATGTCACATTACATGCTGATCCTGAGACTGATGAGGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTGTTGGCATCTGATATTGGCCTCAAGCAAAGTAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCCGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAACGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTGAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCTGCTCTCTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATCCTTGCTTCTGCGGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCCAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGAAGATATATGGGTACAATTACTGGTATCAGCGACATGGATTCTGTAAGATGGAAAAATTCACAGTGGCGGAATCTTCAGGTTGGATGGGATGAATCCGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTCTACATATGTCCGCCTCCGTTCTTCAGACCCAAATTTCCTAAACAACAAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGCCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAATTCCCAGCAGCACAATCTGGAATTTTGCCGTCTATGGTTGCGCCTAGTGCTCTGCATGGAACTCTTACCAATGATGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAATTTCCTCCAACTACATGGTCCCAACAGCAGCAGCTGCAGCAATTATTACAAGTTTCTGCAAGCCAACAGTTACAGCAGCAGCAATTGCCACCCCAGGAACAACAGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCACAACAGTCACAGCGGCAACAGCAGACCTCACAATCCGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTATGCAACAACCGCTTGTATACTCTCAGCTACAACAGCAGCAATTGCTTGCAAGCAATATTCAATCCCATCAAACTAGTCAACCATCTAATAAGAATTCATTTCAGACTACATCTTTATCAGAAGAAACACAGCTTCAGCCACAAATAGAGCAGCAATCTAGCCTTCTTCCGAGACAACAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAAAGCACAACAGCATCCTCAAGTTCAGCAATTTTCACAGCCAATCCCGACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTCCAGCAACAACACCAGCAGCAACCATTGTTCTCCCCGGCTAGCCCATTATTACCGCCTCAGCTGCTACAGCAGCAACACATTCATCCGCAGAACCAGCAGTTACCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACTTAATAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAATCACAGCAGGTTCCCATAACCCAATCCCATAGTCAATTCAAACCAACCACGGCAATTAGAGCATACTCTGGACTGACTGAAGGAGATGCTCCATCTTGTTCTACCTCACCTTCCACTAATAATTGCCCAGTTCCTGTGTCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCTGGCACAGGAGCTACATAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTAGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGGGTCTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGGCTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAACATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCAACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACATAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGCATGCGTACATATAC 2918 44.65 MKAPSNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQQGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKANQQNQVGQFPPTTWSQQQQLQQLLQVSASQQLQQQQLPPQEQQQQLPQQQQLQSQQSQRQQQTSQSVLLNNSVTAANHLPNPSMQQPLVYSQLQQQQLLASNIQSHQTSQPSNKNSFQTTSLSEETQLQPQIEQQSSLLPRQQQPTQFQQAPLQLLQQSLSQKAQQHPQVQQFSQPIPTEQQLQLQLLQKLQQQHQQQPLFSPASPLLPPQLLQQQHIHPQNQQLPPLPLPNQQQFNTSGGSLQTEKLNSNGFASLGLMQSQQVPITQSHSQFKPTTAIRAYSGLTEGDAPSCSTSPSTNNCPVPVSNLLNKNQQGAATLGGDSVVEPATNLAQELHSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEGSSSGTSYCLDAGTIQQALPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNINEAGALSSGLWANHSQRMRTYX 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 153359 167725 - CsaV3_2G001050.1 Csa02g00006 518063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00006 973 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa02g00006 973 CDD B3_DNA 125 226 IPR003340 GO:0003677
Csa02g00006 973 Gene3D - 289 360 - -
Csa02g00006 973 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 972 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa02g00006 973 MobiDBLite consensus disorder prediction 671 724 - -
Csa02g00006 973 MobiDBLite consensus disorder prediction 575 625 - -
Csa02g00006 973 Gene3D - 124 227 IPR015300 -
Csa02g00006 973 PANTHER AUXIN RESPONSE FACTOR 19 1 972 - -
Csa02g00006 973 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Csa02g00006 973 SMART B3_2 126 228 IPR003340 GO:0003677
Csa02g00006 973 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Csa02g00006 973 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Csa02g00006 973 MobiDBLite consensus disorder prediction 510 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00006 Csa-Chr2:153359 Csa02g00687 Csa-Chr2:5531533 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30845 PF02362 B3 2.40E-20 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00006 K14486 - csv:101210917 1634.39