Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00015 ATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCCAGCTGCTGCGAGGTGGAGTCCCAGTCGTCGGAGGTGATGAAAGTAGTGGCCGCCAATAATAAGCCTAGTTCCTTCCAGAGGATTTCCAAACTCGATTTCACTAACCCTAACTCAACCATCTCCGAGGATCTTTCAATCTCTCTCGCCGGATCTGACATCCACGTCTTCACCCTCGCCGAGTTGAAGCTCATCTCTCAGGCCTTTTCTTCCTCGAACTTCCTTGGAGAGGGTGGCTTCGGCCCCGTCTACAAAGGCTTCCTCGATGACAATCTCAGGCCTGGCTTGCTCCCTCAGCCCGTTGCCATTAAACTCCTCGATTTGGATGGAACCCAAGGCCACAGGGAGTGGCTGACGGAGGTCATTTTTCTAGGGCAACTTAAGCACGCCCATCTTGTCAAGCTAATTGGATATTGCTGCGAAGACGAACATAGGATGCTCGTGTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAACTTTTCAAAAAATATTCAATCCCATTGCCGTGGTCCACGAGAATGAAGATCGCTCTTGGAGCTGCGAAGGGTCTCGCCTTCCTACACGAAGCAGATAAACCAGTCATTTACCGAGATTTCAAAGCCTCCAACGTTCTGCTTGATTCTGATTACACTGCGAAGCTGTCTGATTTTGGTCTGGCCAAAGACGGTCCAGAAGGAGACAACACTCACGTCTCCACCCGAGTAATGGGTACACATGGATATGCGGCGCCGGAGTATATAATGACTGGGCATTTGACGGCGATGAGTGATGTGTATAGCTTTGGAGTAGTGCTTTTGGAGCTGCTGACAGGGCGGAGGTCGGTGGAGAAGAGCAGCCGTAAGAGACAGCAGAATTTAGCCGAATGGGCGAGGCCGATGCTGAATGATCCCAGGAAGCTAAGCCGTATAATAGATCCCAGACTTGAAGGCCAATACTCCGAAATGGGAGCCCAGAAAGCAGCCTCGTTGGCTTACCAATGCTTAAGCCACCGCCCAAAGCAGAGGCCCTCCATGAGCTCTGTCGTCAAGGTATTAGAGCCACTCAAGGATTTCGATGATATTTCATCAGGCACCTTTGTGTACACGGTTATGGATCAGCCGAATTCAAATCAAGCCTGA 1158 50.26 MAVKKMKWRSIFSSCCEVESQSSEVMKVVAANNKPSSFQRISKLDFTNPNSTISEDLSISLAGSDIHVFTLAELKLISQAFSSSNFLGEGGFGPVYKGFLDDNLRPGLLPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNVLLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRIIDPRLEGQYSEMGAQKAASLAYQCLSHRPKQRPSMSSVVKVLEPLKDFDDISSGTFVYTVMDQPNSNQA* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 233723 236121 - CsaV3_2G001140.1 Csa02g00015 518072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00015 385 PIRSF ILK 11 86 - -
Csa02g00015 385 PIRSF ILK 110 368 - -
Csa02g00015 385 Pfam Protein tyrosine and serine/threonine kinase 85 358 IPR001245 GO:0004672|GO:0006468
Csa02g00015 385 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00015 385 Gene3D Phosphorylase Kinase; domain 1 45 163 - -
Csa02g00015 385 SUPERFAMILY Protein kinase-like (PK-like) 66 370 IPR011009 -
Csa02g00015 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Csa02g00015 385 CDD STKc_IRAK 87 361 - -
Csa02g00015 385 PANTHER OS01G0588500 PROTEIN-RELATED 27 380 - -
Csa02g00015 385 Gene3D Transferase(Phosphotransferase) domain 1 164 372 - -
Csa02g00015 385 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 27 380 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02993 Csa02g00015 CCT
Csa01g02993 Csa02g00015 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00015 Csa-Chr2:233723 Csa04g02586 Csa-Chr4:25400824 3.11E-163 dispersed
Csa01g03041 Csa-Chr1:26493868 Csa02g00015 Csa-Chr2:233723 1.43E-147 transposed
Csa03g02987 Csa-Chr3:28476356 Csa02g00015 Csa-Chr2:233723 1.21E-162 transposed
Csa04g00698 Csa-Chr4:4725093 Csa02g00015 Csa-Chr2:233723 1.32E-157 transposed
Csa01g02993 Csa-Chr1:26155947 Csa02g00015 Csa-Chr2:233723 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77860 PF07714 PK_Tyr_Ser-Thr 4.60E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00015 - - csv:101209441 768.074