Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00019 | ATGAGCGCACGAAACAGGTTTCCGTTCACTGCAGCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCCGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAACAAGTTTTGAAAACAACTCCCCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACCCATCCCCATCCCCATCCCCACCCTTTTCACTATCAAAATCCCTCTGCTTCTTCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATATTTATGGGGAGAAGGAAGAAAATTCCTTTGTTAGGGAACAACATTCTGGAAACATGAGAGGTTTCTCTGGTTCGTCTATGGATGATTCGTGGCAGTTAACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAACTGCTCTGCTTTACAAGGTGATTACTCTTCTTACTTGCAGCTGCAGAGCTTTGAAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAAGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACAGGCTCAGTTTCTGCAACTCGACTTTCAATGTCTACTCCTAACACAGATTCCTCCATCTTCAGTTTCAATAAGCGTAACGAGAACTGA | 960 | 43.96 | MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVLKTTPLNSSNPSTPAISSITHNSETHPHPHPHPFHYQNPSASSHPSLLPDYRRNRYIYGEKEENSFVREQHSGNMRGFSGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFEKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSTPNTDSSIFSFNKRNEN* | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 258172 | 259300 | + | CsaV3_2G001180.1 | Csa02g00019 | 518076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00019 | 319 | MobiDBLite | consensus disorder prediction | 109 | 155 | - | - | |
Csa02g00019 | 319 | Pfam | WRC | 80 | 122 | IPR014977 | - | |
Csa02g00019 | 319 | MobiDBLite | consensus disorder prediction | 122 | 148 | - | - | |
Csa02g00019 | 319 | MobiDBLite | consensus disorder prediction | 277 | 319 | - | - | |
Csa02g00019 | 319 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Csa02g00019 | 319 | MobiDBLite | consensus disorder prediction | 287 | 319 | - | - | |
Csa02g00019 | 319 | PANTHER | GROWTH-REGULATING FACTOR 6 | 3 | 306 | - | - | |
Csa02g00019 | 319 | ProSiteProfiles | WRC domain profile. | 79 | 123 | IPR014977 | - | |
Csa02g00019 | 319 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Csa02g00019 | 319 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Csa02g00019 | 319 | PANTHER | - | 3 | 306 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02970 | Csa02g00019 | CCT | |
Csa01g02970 | Csa02g00019 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00019 | Csa-Chr2:258172 | Csa03g02826 | Csa-Chr3:27030692 | 3.18E-60 | dispersed | |
Csa02g02778 | Csa-Chr2:24171033 | Csa02g00019 | Csa-Chr2:258172 | 2.11E-56 | transposed | |
Csa01g02970 | Csa-Chr1:26042761 | Csa02g00019 | Csa-Chr2:258172 | 9.31E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30846 | PF08879 | WRC | 6.30E-21 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00019 | - | - | csv:101214722 | 633.254 |