Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00019 ATGAGCGCACGAAACAGGTTTCCGTTCACTGCAGCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATCTTCAAGTACATGGTCTCCGGCGTCCCTATCCCTCCCGAACTGCTTTACAGCATTAAGGCAACCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCTCACCAATATCCACAAGTTTCAGCAGTTGGATGGAACTACTTGCAGATGGGTTCTGGGAGGAAAATTGATCCTGAGCCTGGAAGGTGCAGAAGAACAGACGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAACAAGTTTTGAAAACAACTCCCCTAAACTCTTCTAATCCATCCACCCCAGCCATCTCATCCATCACCCACAACTCTGAAACCCATCCCCATCCCCATCCCCACCCTTTTCACTATCAAAATCCCTCTGCTTCTTCTCATCCATCCTTACTTCCAGATTACAGAAGAAACAGGTATATTTATGGGGAGAAGGAAGAAAATTCCTTTGTTAGGGAACAACATTCTGGAAACATGAGAGGTTTCTCTGGTTCGTCTATGGATGATTCGTGGCAGTTAACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGATACAAGAACTGCTCTGCTTTACAAGGTGATTACTCTTCTTACTTGCAGCTGCAGAGCTTTGAAAAATATAATGAGATGCAGAGTAAGATGGACAGAGATCAAGAACCACAGAAGACAGTGCATCATTTTTTTGATGAATGGTCTCCTAAACATAGAGAGTCTTGGGATGATTTGGATGATAAGTCATCTAATACAGGCTCAGTTTCTGCAACTCGACTTTCAATGTCTACTCCTAACACAGATTCCTCCATCTTCAGTTTCAATAAGCGTAACGAGAACTGA 960 43.96 MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKATSLDTPFISRLFPHQYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQVLKTTPLNSSNPSTPAISSITHNSETHPHPHPHPFHYQNPSASSHPSLLPDYRRNRYIYGEKEENSFVREQHSGNMRGFSGSSMDDSWQLTPLTMSCSSSSSRYKNCSALQGDYSSYLQLQSFEKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTGSVSATRLSMSTPNTDSSIFSFNKRNEN* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 258172 259300 + CsaV3_2G001180.1 Csa02g00019 518076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00019 319 MobiDBLite consensus disorder prediction 109 155 - -
Csa02g00019 319 Pfam WRC 80 122 IPR014977 -
Csa02g00019 319 MobiDBLite consensus disorder prediction 122 148 - -
Csa02g00019 319 MobiDBLite consensus disorder prediction 277 319 - -
Csa02g00019 319 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Csa02g00019 319 MobiDBLite consensus disorder prediction 287 319 - -
Csa02g00019 319 PANTHER GROWTH-REGULATING FACTOR 6 3 306 - -
Csa02g00019 319 ProSiteProfiles WRC domain profile. 79 123 IPR014977 -
Csa02g00019 319 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Csa02g00019 319 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Csa02g00019 319 PANTHER - 3 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02970 Csa02g00019 CCT
Csa01g02970 Csa02g00019 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00019 Csa-Chr2:258172 Csa03g02826 Csa-Chr3:27030692 3.18E-60 dispersed
Csa02g02778 Csa-Chr2:24171033 Csa02g00019 Csa-Chr2:258172 2.11E-56 transposed
Csa01g02970 Csa-Chr1:26042761 Csa02g00019 Csa-Chr2:258172 9.31E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30846 PF08879 WRC 6.30E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00019 - - csv:101214722 633.254