Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00027 ATGCCGGTGCATCTCACGCCCAATGCAATCTCTGCTATTGTCGCTGGCGACGTTAATTCCAAGCCTCTGGTGCAGGTTCTGGATATCAAGCTGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATATCCGATGCTGTTTCTGCTGAGCAGGCTATGCTCGCCACTCAGCTTAATGATGTTGTTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGACTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTACTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACACCATCTGTAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCATAATGTGCAAAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAACGAGGCACCAGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAACAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGTTTTAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTGAAACCTGCACGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACTGTGCCCAGATGAAGATGATACCATACCAAGACAACAGTTTTCTTTTAAACCTATCAGTGAAATCGAGAATGCTGAAACCAACTCTATTCTGGATGTTATTGGGATTGTAACATCTATCAATCCATCAATCCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGTATTTGAAGGATGCGTCTGGCAGGAGTGTTGAGCTAACAATGTGGGGGGATTTTTGCAACAAGGAAGGCCAAAAATTGCAAGAAATAATTTACTCAGGCCTTTCTCCAGTTTTAGCTGTGAAATCCGGGAAGGTGAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCCGATCTTCCTGAGGCTCACATCTTGAGGGAGTGGTACGATGGTGGGGGAAAGAATACTACTTCTCTATCTATTTCTAAAGAAATTGTACCAGGATCTGCCAAGAATGATATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGACAAGCCAGATTGGATAACAGTGAAAGCAACAATATCGTTTATCAAAACAGATTCTTTCTGCTACACAGCATGCCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGGTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGACTACAGGTATCTTCTTCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACGGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAATTGTACATGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTTGGTGAAATCATCAGAAGTAAAATCTTCGATCAATTTCTGTTTAGGCTCAAAATTAAGGAGGAGGTGTATGGCGATGAACAGAGAGTGAAAAATACTGTAGTCAAGGCAGATAGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCCAAATTTTCGAGGTAA 1872 42.04 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDVVKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATPSVNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFKPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKFSR* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 279931 285822 + CsaV3_2G001260.1 Csa02g00027 518084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00027 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa02g00027 623 CDD RPA1_DBD_A 180 283 - -
Csa02g00027 623 Gene3D - 431 622 IPR012340 -
Csa02g00027 623 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa02g00027 623 CDD RPA1_DBD_B 312 419 - -
Csa02g00027 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Csa02g00027 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Csa02g00027 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Csa02g00027 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Csa02g00027 623 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Csa02g00027 623 CDD RPA1_DBD_C 447 620 IPR013955 -
Csa02g00027 623 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Csa02g00027 623 Pfam OB-fold nucleic acid binding domain 192 263 IPR004365 GO:0003676
Csa02g00027 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Csa02g00027 623 Gene3D - 290 430 IPR012340 -
Csa02g00027 623 Gene3D - 177 287 IPR012340 -
Csa02g00027 623 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Csa02g00027 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Csa02g00027 623 Gene3D - 3 111 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00297 Csa-Chr1:1850827 Csa02g00027 Csa-Chr2:279931 2.74E-102 dispersed
Csa02g00027 Csa-Chr2:279931 Csa03g00107 Csa-Chr3:835283 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00027 K07466 - csv:101207583 1233.39