Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00036 ATGAAGAAGGACACCTCCATGAATTCTAACTTAAAGCTTATTCTACCTCCTCCCGACGAACTTACCTTTGGCTTCATAACTCGAAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAAGGACGGCGTGCGGATTGTTTCTCAAACGGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATTGGGAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAAATGAATGCCGAGGAATCTTATTGTCGGTTGGTTGCTAAGGAGCTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTCTGTTATCAAATCTTCTATGACAATGGTGCCATTTTCATTATCTTGGAATACATGGATGGTGGATCGCTTGCAGATCTTCTGAAAAAAGTTGAAACAGTCCTTGAGCCGTATCTTGCAGCCATTTGTTACCAGGTACTAAACGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTATTGATAAATCATAGAGGCGAAGTTAAGATTACTGACTTTGGTGTAAGCGCTATACTGGCGAATACGGCCGATCAAGCAAATTCTTTTGTTGGCACATATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATACGACAACAAAAGTGACATATGGAGTTTGGGTTTGATTTTGCTTGAATGTGCGACGGGTCAATTTCCATATGCTCCACCAGATAAAGAAAAAGGATGGGAAGGCTTTTTTGATGTTATGGTGGCCGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAAGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAGAACTTCGATGTAGATCTCGCAGCTTACTTCAAAGATGCTGGTTCTCCATTGGCAACCTTCTAA 1062 41.43 MKKDTSMNSNLKLILPPPDELTFGFITRSGTFTDGDLLVNKDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETVLEPYLAAICYQVLNGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILANTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLILLECATGQFPYAPPDKEKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFENFDVDLAAYFKDAGSPLATF* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 320884 323859 + CsaV3_2G001350.1 Csa02g00036 518093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00036 353 SUPERFAMILY Protein kinase-like (PK-like) 55 334 IPR011009 -
Csa02g00036 353 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 352 - -
Csa02g00036 353 CDD PKc_MAPKK_plant_like 68 334 - -
Csa02g00036 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Csa02g00036 353 PANTHER MAP KINASE KINASE 5 352 - -
Csa02g00036 353 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Csa02g00036 353 SMART serkin_6 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Csa02g00036 353 Pfam Protein kinase domain 72 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00036 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101206374 710.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g02954 Csa02g00036 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00036 Csa-Chr2:320884 Csa02g00082 Csa-Chr2:578525 1.53E-111 dispersed
Csa01g00734 Csa-Chr1:4638650 Csa02g00036 Csa-Chr2:320884 9.29E-80 transposed
Csa02g00081 Csa-Chr2:576984 Csa02g00036 Csa-Chr2:320884 1.18E-25 transposed
Csa03g02812 Csa-Chr3:26953475 Csa02g00036 Csa-Chr2:320884 8.56E-57 transposed
Csa03g02963 Csa-Chr3:28193381 Csa02g00036 Csa-Chr2:320884 8.65E-40 transposed
Csa05g01916 Csa-Chr5:22320443 Csa02g00036 Csa-Chr2:320884 7.97E-40 transposed
Csa01g02954 Csa-Chr1:25913871 Csa02g00036 Csa-Chr2:320884 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02954 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 7.3e-134 473.8
Csa02g00036 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 4.3e-126 448.0
Csa02g00082 . 33 304 MAP Kinase Kinase Gene Family AT4G26070 53.1 2.8e-85 312.4
Csa01g02954 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.8e-132 469.2
Csa02g00036 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 6.6e-119 424.1
Csa02g00082 . 33 277 MAP Kinase Kinase Gene Family AT4G29810 58.4 8.4e-82 300.8
Csa03g03971 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.7e-227 785.4
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT1G51660 64.3 8.4e-120 427.2
Csa01g00734 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 2.0e-84 309.7
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT3G21220 58.2 6.2e-112 401.0
Csa01g00734 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 1.1e-84 310.5
Csa02g00082 . 29 307 MAP Kinase Kinase Gene Family AT5G56580 80.7 3.8e-125 444.9
Csa01g02954 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-117 419.9
Csa02g00036 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.9e-108 389.4
Csa02g00081 . 1 100 MAP Kinase Kinase Gene Family AT5G56580 75.0 1.5e-36 150.6
Csa01g00734 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 9.6e-109 390.2
Csa01g00734 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.9 1.1e-82 303.5
Csa01g00734 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 4.5e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77861 PF00069 Pkinase 1.40E-69 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00036 Csa_Chr02 FPKM 9.001235 10.635993 297.612091 300.020752 2771.832764 2438.973389 2558.943604 20.607513 19.37639 18.341455