Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00036 ATGAAGAAGGACACCTCCATGAATTCTAACTTAAAGCTTATTCTACCTCCTCCCGACGAACTTACCTTTGGCTTCATAACTCGAAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAAGGACGGCGTGCGGATTGTTTCTCAAACGGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATTGGGAAAGGAAATGGTGGAATTGTTCAATTAGTCCGACATAAATGGACCAACCAGTTTTTTGCTCTAAAGGTGATTCAAATGAATGCCGAGGAATCTTATTGTCGGTTGGTTGCTAAGGAGCTAAAAATTAATCAGTTGGCACAAAACCCTTACATCGTTGTCTGTTATCAAATCTTCTATGACAATGGTGCCATTTTCATTATCTTGGAATACATGGATGGTGGATCGCTTGCAGATCTTCTGAAAAAAGTTGAAACAGTCCTTGAGCCGTATCTTGCAGCCATTTGTTACCAGGTACTAAACGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTATTGATAAATCATAGAGGCGAAGTTAAGATTACTGACTTTGGTGTAAGCGCTATACTGGCGAATACGGCCGATCAAGCAAATTCTTTTGTTGGCACATATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATACGACAACAAAAGTGACATATGGAGTTTGGGTTTGATTTTGCTTGAATGTGCGACGGGTCAATTTCCATATGCTCCACCAGATAAAGAAAAAGGATGGGAAGGCTTTTTTGATGTTATGGTGGCCGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCACAGAAGAGAAGCTCTGCACGTGAACTTCTGGTGCATCCTTTCATCAAAAAGTTCGAGAACTTCGATGTAGATCTCGCAGCTTACTTCAAAGATGCTGGTTCTCCATTGGCAACCTTCTAA 1062 41.43 MKKDTSMNSNLKLILPPPDELTFGFITRSGTFTDGDLLVNKDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCRLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETVLEPYLAAICYQVLNGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILANTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLILLECATGQFPYAPPDKEKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFENFDVDLAAYFKDAGSPLATF* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 320884 323859 + CsaV3_2G001350.1 Csa02g00036 518093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00036 353 SUPERFAMILY Protein kinase-like (PK-like) 55 334 IPR011009 -
Csa02g00036 353 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 352 - -
Csa02g00036 353 CDD PKc_MAPKK_plant_like 68 334 - -
Csa02g00036 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Csa02g00036 353 PANTHER MAP KINASE KINASE 5 352 - -
Csa02g00036 353 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Csa02g00036 353 SMART serkin_6 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Csa02g00036 353 Pfam Protein kinase domain 72 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00036 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02954 Csa02g00036 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00036 Csa-Chr2:320884 Csa02g00082 Csa-Chr2:578525 1.53E-111 dispersed
Csa01g00734 Csa-Chr1:4638650 Csa02g00036 Csa-Chr2:320884 9.29E-80 transposed
Csa02g00081 Csa-Chr2:576984 Csa02g00036 Csa-Chr2:320884 1.18E-25 transposed
Csa03g02812 Csa-Chr3:26953475 Csa02g00036 Csa-Chr2:320884 8.56E-57 transposed
Csa03g02963 Csa-Chr3:28193381 Csa02g00036 Csa-Chr2:320884 8.65E-40 transposed
Csa05g01916 Csa-Chr5:22320443 Csa02g00036 Csa-Chr2:320884 7.97E-40 transposed
Csa01g02954 Csa-Chr1:25913871 Csa02g00036 Csa-Chr2:320884 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77861 PF00069 Pkinase 1.40E-69 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00036 K20603 - csv:101206374 710.294