Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00037 ATGGTGGTGTTTTCTAAGGCAATGACATCAGTGGCGATTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGTGGAGGAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGTTTCATATTGGTTCACGTTATGCCCAAAATCACCTCCATCCCAACCCCAATGGGGGATCTTGTGGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAGAAATATGAACAAGTTTTTGTCCCTTTTAAGAAGTTATGTAAAAGAGAAAAGTTTCTTATTTTGGTAGAAACTTTGATTTTGGAGGATGATAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAAAGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGTGATTCAGTACCCTCTGCTATTATGAGAACTGCTTCTAGTTCTTTTGATATTTATGTTAAATATAAGAGAAGAGTTATCACAAGAAAGGCTAGTACTGCTCCATCTACTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTACTACAAGGGTTCCAGTGCTGATAGTGAAAAATCATTGGGAACTGATATGTCTTCGTCTTACTTGTCGATTGTTCATCAAAGGGATGACAGCATCGGAGTTGACTCTACTGAGCAACTGCGTACTCTTACTGAGGAGGAAGATATGCAGTCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACGCACTCAGAAGAAGGTTCAGTCACTTACACAAGAATACCTTGAAGAATCAAGAAAAGTGACTGATGCTGTGGAAAGGGAACAAGCTTTGAGGAAAGTTGCTGCCAAGGAGAAAGCAAAGCACTTGGAAGCCATTAAAGAGCTGGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGACAGTTAGCTGAGCTTGATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTATCGATACTCTTCTGACTAATGATAGGAGATACAGAAGATATACCACTGCTGAAATAGAGGCTGCAACTAATTTCTTCAATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTATAAAAGCAGTCTTGATCATACCCCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGACGAGTTTCTAAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAATGGAAAAGCTCCCCTTCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTTGACAGAAACTTCGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGCGATATCGTGCCAGACAATGTCACGGCGTACCAGAACACCGTTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCGGATACTTACGCACTTGGAGTAACAATTCTGCAGTTATTGACTGGGCGACAGCCACACGGTCTTCTTCTCGCTATTGAAAATTCCATTGCAAGCGCTTCCCTTGCAGATATTCTAGACAAGTCAATTAGTAACTGGCCTCTAGCTAAAGCTGAAGAGCTAGCTCGACTTGCATTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCCGAAGTTCTTCCAATCCTTAAAAGACTTGTTGATTTTGCAGACACTTTTCAAAATGAAGACAATGGTTTTGGCAACCCCCCCAGCCACTACTTCTGCCCAATCCTCCAGGAAGTCATGGAGGATCCTTATATAGCAGCTGATGGCTTTAGTTATGAGTATGTTGCCATTAAAGCATGGCTCGAGAAACACGACGTATCGCCGGCGACAAAGCTTAAGCTCCGGCATTCTTTTTTTATTCCAAACTACACTCTACGTTCTGCCATACGAGAGTGGAGGTCAAGAGTGACATTTTCGTCTTCCTAA 2205 42.99 MVVFSKAMTSVAIAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQVFVPFKKLCKREKFLILVETLILEDDNPATALLRYASESGIKSLVLGSCFRTCIARKLKGDSVPSAIMRTASSSFDIYVKYKRRVITRKASTAPSTETDSRQWMLGDTDYYKGSSADSEKSLGTDMSSSYLSIVHQRDDSIGVDSTEQLRTLTEEEDMQSEVESLQLELETTVSLYKQACEELVRTQKKVQSLTQEYLEESRKVTDAVEREQALRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELDALKESVEKQKIIDTLLTNDRRYRRYTTAEIEAATNFFNEVNVIGEGGYGKVYKSSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKAPLPWSTRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTAYQNTVLAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASASLADILDKSISNWPLAKAEELARLALKCLKLRCRDRPDLESEVLPILKRLVDFADTFQNEDNGFGNPPSHYFCPILQEVMEDPYIAADGFSYEYVAIKAWLEKHDVSPATKLKLRHSFFIPNYTLRSAIREWRSRVTFSSS* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 323957 327623 - CsaV3_2G001360.1 Csa02g00037 518094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00037 734 ProSitePatterns Protein kinases ATP-binding region signature. 383 404 IPR017441 GO:0005524
Csa02g00037 734 SMART serkin_6 377 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00037 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Csa02g00037 734 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 149 - -
Csa02g00037 734 SUPERFAMILY Protein kinase-like (PK-like) 360 633 IPR011009 -
Csa02g00037 734 Pfam Protein kinase domain 378 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00037 734 CDD RING-Ubox_WDSUB1_like 664 704 - -
Csa02g00037 734 CDD STK_N 30 167 - -
Csa02g00037 734 Coils Coil 303 349 - -
Csa02g00037 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 731 IPR013083 -
Csa02g00037 734 Gene3D HUPs 10 163 IPR014729 -
Csa02g00037 734 SMART Ubox_2 663 725 IPR003613 GO:0004842|GO:0016567
Csa02g00037 734 Pfam U-box domain 661 726 IPR003613 GO:0004842|GO:0016567
Csa02g00037 734 Pfam Universal stress protein family 26 160 IPR006016 -
Csa02g00037 734 PANTHER OS02G0152300 PROTEIN 230 728 - -
Csa02g00037 734 PANTHER OS02G0152300 PROTEIN 9 217 - -
Csa02g00037 734 Coils Coil 264 291 - -
Csa02g00037 734 Gene3D Transferase(Phosphotransferase) domain 1 450 656 - -
Csa02g00037 734 Gene3D Phosphorylase Kinase; domain 1 356 449 - -
Csa02g00037 734 ProSiteProfiles U-box domain profile. 659 732 IPR003613 GO:0004842|GO:0016567
Csa02g00037 734 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 9 217 - -
Csa02g00037 734 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 230 728 - -
Csa02g00037 734 ProSiteProfiles Protein kinase domain profile. 377 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00037 734 SUPERFAMILY RING/U-box 650 728 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00037 Csa-Chr2:323957 Csa05g00483 Csa-Chr5:3136618 8.49E-17 dispersed
Csa02g00037 Csa-Chr2:323957 Csa03g04417 Csa-Chr3:38540278 1.57E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77862 PF00069 Pkinase 2.60E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00037 - - csv:101213999 1351.65