Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00066 ATGATCGTTGGCGAGCAGCCCAAGCGCACGAATCCAACGGTTCAGATTCCACAGTGGTCGTTTCTGGAGGATTCCGGGATGGATGTGTACAGTCATTCGCCGGGAAGTGGTGGTAGCAGCGGGTCTGTCAAGTGTGACGGATGTTCTAGCGGTGGTGGGTACTCTCCTTATTATCTACAGGAAGCATTAGCGATGTTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATATTGATGTTTCGGGTAAGGAGATAGATTCTCCGTTGGATGCCTACTCCTCTGATCAGTTTCGAATGTATGAGTTTAAAATTAAAAAGTGTACGAGAGGAAGATCGCATGACTGGACCGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTATTATTCAGGTACGGCGTGTGCGGATTTTCGGAAGGGAAGCTGTGTGAAAGGGGATGCGTGTGAGTTTGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCGTGCAAGGATGGGACGAGTTGCCGGAGGAGAGTTTGTTTCTTTGCTCATACACCGGAGCAACTTAGGGTTTTGCCTCAACAAAGTCCTCGGAGTACGAGCTCTATCCCTTCGTACGATGGATCGCCTCTCCGACAAGCAATCGAGGCCTGTGCAAAACAAATGCCCTATTTATCATCTCCAGGAACATCGCCACCAGTATCTCCTCGAATTGAATCTCCACCTCAATCACCGATTATTAAATCACTAAATCGACCTCACGCACCAAGTTCGATCAAAGAAATGGTTGCATCACTTCGAAATTTACAACTCAATAAGGAACTCTGTAAGTTACCATCTCCTTCTTCTTCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCACTCGACCCGGTTTATCTACCCTTCCAGAAACTTCAACTCCTCCAGGTATCCGATATCTCGATTTCTGGGACCTGGGTACCGGAGAGGAACCGGCAATGGAGCGAGTGGAGTCCGGAAGAGACCTTCGTGCAAAAATGTTCGAGAAATTAAGGAAGGAGAACTCCGTTGGCTGCGGTGATCAGGACAAAAACAGCAGTGGTGCCGGAGGTCTGGATGTCGATTGGATCTCAGAGCTCCTCCAGTAA 1191 49.45 MIVGEQPKRTNPTVQIPQWSFLEDSGMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEIDSPLDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSIKEMVASLRNLQLNKELCKLPSPSSSSSSWNVQVGSPVFGSPKESTTRPGLSTLPETSTPPGIRYLDFWDLGTGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKNSSGAGGLDVDWISELLQ* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 479979 482606 - CsaV3_2G001650.1 Csa02g00066 518123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00066 396 PANTHER UNKEMPT FAMILY MEMBER 8 395 IPR045234 -
Csa02g00066 396 MobiDBLite consensus disorder prediction 237 263 - -
Csa02g00066 396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 395 - -
Csa02g00066 396 Gene3D - 140 203 - -
Csa02g00066 396 MobiDBLite consensus disorder prediction 291 328 - -
Csa02g00066 396 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Csa02g00066 396 SMART c3hfinal6 174 197 IPR000571 GO:0046872
Csa02g00066 396 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Csa02g00066 396 MobiDBLite consensus disorder prediction 368 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00066 Csa-Chr2:479979 Csa04g02516 Csa-Chr4:24989859 2.80E-100 dispersed
Csa02g00066 Csa-Chr2:479979 Csa01g02890 Csa-Chr1:25366330 3.23E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30849 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00066 - - csv:101221692 773.852