Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00079 ATGTCGTGGCAAACGTACGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTTGCCGCCGCTGCCATTGTCGGCCACGACGGCAGCGTTTGGGCTCAGAGCGCCTCATTTCCACAGTTCAAGTCTGATGAGATCAATGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGTGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTCGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 49.75 MSWQTYVDDHLMCDIDGQGQHLAAAAIVGHDGSVWAQSASFPQFKSDEINGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 570550 572530 + CsaV3_2G001780.1 Csa02g00079 518136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00079 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Csa02g00079 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Csa02g00079 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Csa02g00079 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Csa02g00079 133 SMART prof_2 1 133 IPR005455 GO:0003779
Csa02g00079 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Csa02g00079 133 PANTHER PROFILIN 1 133 - -
Csa02g00079 133 CDD PROF 2 132 IPR005455 GO:0003779
Csa02g00079 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Csa02g00079 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00079 Csa-Chr2:570550 Csa03g02348 Csa-Chr3:21171396 6.97E-76 dispersed
Csa02g00079 Csa-Chr2:570550 Csa02g00080 Csa-Chr2:573861 4.31E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00079 K05759 - csv:101219322 269.24