Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00079 | ATGTCGTGGCAAACGTACGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTTGCCGCCGCTGCCATTGTCGGCCACGACGGCAGCGTTTGGGCTCAGAGCGCCTCATTTCCACAGTTCAAGTCTGATGAGATCAATGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGTGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTCGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG | 402 | 49.75 | MSWQTYVDDHLMCDIDGQGQHLAAAAIVGHDGSVWAQSASFPQFKSDEINGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL* | 134 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 570550 | 572530 | + | CsaV3_2G001780.1 | Csa02g00079 | 518136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 29 | 42 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 54 | 68 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 73 | 82 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 86 | 101 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 106 | 119 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Plant profilin signature | 119 | 132 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 23 | 32 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 42 | 62 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 66 | 80 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 102 | 115 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PRINTS | Profilin signature | 115 | 132 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | Pfam | Profilin | 1 | 132 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 132 | IPR036140 | - | |
Csa02g00079 | 133 | SMART | prof_2 | 1 | 133 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PANTHER | PROFILIN | 1 | 133 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | PANTHER | PROFILIN | 1 | 133 | - | - | |
Csa02g00079 | 133 | CDD | PROF | 2 | 132 | IPR005455 | GO:0003779 | |
Csa02g00079 | 133 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
Csa02g00079 | 133 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00079 | Csa-Chr2:570550 | Csa03g02348 | Csa-Chr3:21171396 | 6.97E-76 | dispersed | |
Csa02g00079 | Csa-Chr2:570550 | Csa02g00080 | Csa-Chr2:573861 | 4.31E-71 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00079 | K05759 | - | csv:101219322 | 269.24 |