Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00080 ATGTCGTGGCAAGTTTACGTCGATGACCATTTGATGTGCGAAATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAGCTTTCCCTCAGCTCAAGCCTGAAGAAGTTTCTGGCATCGTGGGTGACTTCGATAACCCTGGGACGCTTGCTCCGACTGGTTTGTACATCGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGTGATAAGCTTTAATAGTACTGTGTTATACTTTTCTTCTGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGTATCTATGACGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATGGATCAGGGTCTCTAA 435 46.67 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSQAFPQLKPEEVSGIVGDFDNPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKVISFNSTVLYFSSGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLMDQGL* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 573861 575275 + CsaV3_2G001790.1 Csa02g00080 518137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00080 144 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Csa02g00080 144 SMART prof_2 1 144 IPR005455 GO:0003779
Csa02g00080 144 Pfam Profilin 1 143 IPR005455 GO:0003779
Csa02g00080 144 PANTHER PROFILIN-2 1 144 - -
Csa02g00080 144 Gene3D Dynein light chain 2a, cytoplasmic 1 144 - -
Csa02g00080 144 CDD PROF 2 143 IPR005455 GO:0003779
Csa02g00080 144 PANTHER PROFILIN 1 144 IPR005455 GO:0003779
Csa02g00080 144 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 126 143 IPR005455 GO:0003779
Csa02g00080 144 SUPERFAMILY Profilin (actin-binding protein) 2 143 IPR036140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00080 K05759 PFN; profilin - csv:101219562 263.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00080 Csa-Chr2:573861 Csa03g02348 Csa-Chr3:21171396 2.36E-69 dispersed
Csa02g00079 Csa-Chr2:570550 Csa02g00080 Csa-Chr2:573861 4.31E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-213 738.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT2G37620 94.3 5.7e-172 600.5
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.6e-214 740.3
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-213 739.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G59370 95.6 1.0e-173 606.3
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G46520 95.9 4.7e-174 607.4
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 3.2e-215 744.2
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.3e-215 742.7
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.7e-213 736.1
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT3G12110 94.6 8.8e-173 603.2
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.7e-208 721.8
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT3G18780 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 5.9e-209 723.4
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Csa05g01846 . 1 322 Cytoskeleton Gene Families AT1G49240 91.0 3.7e-171 597.8
Csa02g01593 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa06g02804 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Csa03g03574 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa04g01489 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
Csa07g00510 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-213 738.8
Csa05g00706 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 2.3e-213 738.0
Csa05g01846 . 1 316 Cytoskeleton Gene Families AT5G09810 94.3 7.5e-172 600.1
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT2G19760 69.7 7.6e-55 209.9
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29350 71.0 4.5e-55 210.7
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Csa02g00080 . 1 100 Cytoskeleton Gene Families AT5G56600 70.0 7.0e-38 153.3
Csa02g00079 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Csa03g02348 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
Csa02g00080 . 1 145 Cytoskeleton Gene Families AT4G29340 64.9 2.3e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00080 Csa_Chr02 FPKM 0.157943 0.0 0.0 0.070795 0.083324 0.0 0.0 0.059472 0.055571 0.0