Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00080 ATGTCGTGGCAAGTTTACGTCGATGACCATTTGATGTGCGAAATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAGCTTTCCCTCAGCTCAAGCCTGAAGAAGTTTCTGGCATCGTGGGTGACTTCGATAACCCTGGGACGCTTGCTCCGACTGGTTTGTACATCGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGTGATAAGCTTTAATAGTACTGTGTTATACTTTTCTTCTGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGTATCTATGACGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATGGATCAGGGTCTCTAA 435 46.67 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSQAFPQLKPEEVSGIVGDFDNPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKVISFNSTVLYFSSGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLMDQGL* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 573861 575275 + CsaV3_2G001790.1 Csa02g00080 518137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00080 144 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Csa02g00080 144 SMART prof_2 1 144 IPR005455 GO:0003779
Csa02g00080 144 Pfam Profilin 1 143 IPR005455 GO:0003779
Csa02g00080 144 PANTHER PROFILIN-2 1 144 - -
Csa02g00080 144 Gene3D Dynein light chain 2a, cytoplasmic 1 144 - -
Csa02g00080 144 CDD PROF 2 143 IPR005455 GO:0003779
Csa02g00080 144 PANTHER PROFILIN 1 144 IPR005455 GO:0003779
Csa02g00080 144 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Csa02g00080 144 PRINTS Profilin signature 126 143 IPR005455 GO:0003779
Csa02g00080 144 SUPERFAMILY Profilin (actin-binding protein) 2 143 IPR036140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00080 Csa-Chr2:573861 Csa03g02348 Csa-Chr3:21171396 2.36E-69 dispersed
Csa02g00079 Csa-Chr2:570550 Csa02g00080 Csa-Chr2:573861 4.31E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00080 K05759 - csv:101219562 263.848