Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g00080 | ATGTCGTGGCAAGTTTACGTCGATGACCATTTGATGTGCGAAATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAGCTTTCCCTCAGCTCAAGCCTGAAGAAGTTTCTGGCATCGTGGGTGACTTCGATAACCCTGGGACGCTTGCTCCGACTGGTTTGTACATCGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGTGATAAGCTTTAATAGTACTGTGTTATACTTTTCTTCTGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGTATCTATGACGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATGGATCAGGGTCTCTAA | 435 | 46.67 | MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSQAFPQLKPEEVSGIVGDFDNPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKVISFNSTVLYFSSGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLMDQGL* | 145 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 573861 | 575275 | + | CsaV3_2G001790.1 | Csa02g00080 | 518137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g00080 | 144 | PRINTS | Plant profilin signature | 52 | 66 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Plant profilin signature | 71 | 80 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | SMART | prof_2 | 1 | 144 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | Pfam | Profilin | 1 | 143 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PANTHER | PROFILIN-2 | 1 | 144 | - | - | |
Csa02g00080 | 144 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 144 | - | - | |
Csa02g00080 | 144 | CDD | PROF | 2 | 143 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PANTHER | PROFILIN | 1 | 144 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Profilin signature | 40 | 60 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Profilin signature | 64 | 78 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | PRINTS | Profilin signature | 126 | 143 | IPR005455 | GO:0003779 | |
Csa02g00080 | 144 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 143 | IPR036140 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00080 | Csa-Chr2:573861 | Csa03g02348 | Csa-Chr3:21171396 | 2.36E-69 | dispersed | |
Csa02g00079 | Csa-Chr2:570550 | Csa02g00080 | Csa-Chr2:573861 | 4.31E-71 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g00080 | K05759 | - | csv:101219562 | 263.848 |