Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00081 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCATGACGGCAATCTACTCCTGAATCAGAAAGGAATGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGTTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTTGTTATACTGGTGGAACAATTCTACACTCTTGCATCTGTTTTTGGTCATTCTACTTTTGCTTTAAGTTATTCACATATTTTGTTCCTTGGCTTTGTTATAATAGTTGAAGAAGCTGCTGCAGGAAGGTAG 426 40.38 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGMRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVVILVEQFYTLASVFGHSTFALSYSHILFLGFVIIVEEAAAGR* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 576984 577935 + CsaV3_2G001800.1 Csa02g00081 518138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00081 141 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 102 - -
Csa02g00081 141 SUPERFAMILY Protein kinase-like (PK-like) 61 108 IPR011009 -
Csa02g00081 141 Gene3D Phosphorylase Kinase; domain 1 7 102 - -
Csa02g00081 141 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 102 - -
Csa02g00081 141 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00081 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 189.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00081 Csa-Chr2:576984 Csa01g02954 Csa-Chr1:25913871 1.96E-24 dispersed
Csa02g00081 Csa-Chr2:576984 Csa02g00036 Csa-Chr2:320884 1.18E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02954 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 7.3e-134 473.8
Csa02g00036 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 4.3e-126 448.0
Csa02g00082 . 33 304 MAP Kinase Kinase Gene Family AT4G26070 53.1 2.8e-85 312.4
Csa01g02954 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.8e-132 469.2
Csa02g00036 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 6.6e-119 424.1
Csa02g00082 . 33 277 MAP Kinase Kinase Gene Family AT4G29810 58.4 8.4e-82 300.8
Csa03g03971 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.7e-227 785.4
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT1G51660 64.3 8.4e-120 427.2
Csa01g00734 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 2.0e-84 309.7
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT3G21220 58.2 6.2e-112 401.0
Csa01g00734 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 1.1e-84 310.5
Csa02g00082 . 29 307 MAP Kinase Kinase Gene Family AT5G56580 80.7 3.8e-125 444.9
Csa01g02954 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-117 419.9
Csa02g00036 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.9e-108 389.4
Csa02g00081 . 1 100 MAP Kinase Kinase Gene Family AT5G56580 75.0 1.5e-36 150.6
Csa01g00734 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 9.6e-109 390.2
Csa01g00734 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.9 1.1e-82 303.5
Csa01g00734 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 4.5e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0056596 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00081 Csa_Chr02 FPKM 3.829468 3.186502 33.007923 32.817844 75.563248 65.525566 76.076508 25.034451 25.498075 24.708393