Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00082 ATGTCGTCTCCATCAAAATCTGCTATTGTTTGTGCTATTTTGGCTTGTGTATATCATAACCTCGGGTGCAAATTCTATAATTCTGTTGGACTCTTCTACCACATGCTTCAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTCTCAGGTTTCTGTTATTCGCATCAAAACTTGAATGAAAAGGTTTTACAAGGTCTGGTATACTTACATCATGAGCGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAGATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGAGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTCCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCCGAATTCTGTTCCTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAACAATAA 936 40.71 MSSPSKSAIVCAILACVYHNLGCKFYNSVGLFYHMLQVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVSGFCYSHQNLNEKVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVASLDPPVSFPRQQQQ* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 578525 579771 + CsaV3_2G001810.1 Csa02g00082 518139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00082 311 ProSiteProfiles Protein kinase domain profile. 15 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 Gene3D Transferase(Phosphotransferase) domain 1 89 299 - -
Csa02g00082 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Csa02g00082 311 SUPERFAMILY Protein kinase-like (PK-like) 43 304 IPR011009 -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 125 306 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 30 122 - -
Csa02g00082 311 SMART serkin_6 33 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 Pfam Protein kinase domain 42 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 CDD PKc_MAPKK_plant_like 36 286 - -
Csa02g00082 311 Gene3D Phosphorylase Kinase; domain 1 27 87 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 125 306 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 30 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00082 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00036 Csa-Chr2:320884 Csa02g00082 Csa-Chr2:578525 1.53E-111 dispersed
Csa02g00082 Csa-Chr2:578525 Csa03g03971 Csa-Chr3:34710986 5.28E-72 dispersed
Csa02g00082 Csa-Chr2:578525 Csa01g02954 Csa-Chr1:25913871 1.34E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02954 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 7.3e-134 473.8
Csa02g00036 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 4.3e-126 448.0
Csa02g00082 . 33 304 MAP Kinase Kinase Gene Family AT4G26070 53.1 2.8e-85 312.4
Csa01g02954 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.8e-132 469.2
Csa02g00036 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 6.6e-119 424.1
Csa02g00082 . 33 277 MAP Kinase Kinase Gene Family AT4G29810 58.4 8.4e-82 300.8
Csa03g03971 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.7e-227 785.4
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT1G51660 64.3 8.4e-120 427.2
Csa01g00734 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 2.0e-84 309.7
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT3G21220 58.2 6.2e-112 401.0
Csa01g00734 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 1.1e-84 310.5
Csa02g00082 . 29 307 MAP Kinase Kinase Gene Family AT5G56580 80.7 3.8e-125 444.9
Csa01g02954 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-117 419.9
Csa02g00036 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.9e-108 389.4
Csa02g00081 . 1 100 MAP Kinase Kinase Gene Family AT5G56580 75.0 1.5e-36 150.6
Csa01g00734 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 9.6e-109 390.2
Csa01g00734 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.9 1.1e-82 303.5
Csa01g00734 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 4.5e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77864 PF00069 Pkinase 7.70E-54 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g00082 Csa_Chr02 FPKM 8.62234 13.4156 35.834209 31.116117 3.472126 3.818007 4.01173 84.846581 93.938782 80.413788