Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00082 ATGTCGTCTCCATCAAAATCTGCTATTGTTTGTGCTATTTTGGCTTGTGTATATCATAACCTCGGGTGCAAATTCTATAATTCTGTTGGACTCTTCTACCACATGCTTCAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTCTCAGGTTTCTGTTATTCGCATCAAAACTTGAATGAAAAGGTTTTACAAGGTCTGGTATACTTACATCATGAGCGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAGATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGAGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTCCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCCGAATTCTGTTCCTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAACAATAA 936 40.71 MSSPSKSAIVCAILACVYHNLGCKFYNSVGLFYHMLQVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVSGFCYSHQNLNEKVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVASLDPPVSFPRQQQQ* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 578525 579771 + CsaV3_2G001810.1 Csa02g00082 518139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00082 311 ProSiteProfiles Protein kinase domain profile. 15 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 Gene3D Transferase(Phosphotransferase) domain 1 89 299 - -
Csa02g00082 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Csa02g00082 311 SUPERFAMILY Protein kinase-like (PK-like) 43 304 IPR011009 -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 125 306 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 30 122 - -
Csa02g00082 311 SMART serkin_6 33 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 Pfam Protein kinase domain 42 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00082 311 CDD PKc_MAPKK_plant_like 36 286 - -
Csa02g00082 311 Gene3D Phosphorylase Kinase; domain 1 27 87 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 125 306 - -
Csa02g00082 311 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 30 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00036 Csa-Chr2:320884 Csa02g00082 Csa-Chr2:578525 1.53E-111 dispersed
Csa02g00082 Csa-Chr2:578525 Csa03g03971 Csa-Chr3:34710986 5.28E-72 dispersed
Csa02g00082 Csa-Chr2:578525 Csa01g02954 Csa-Chr1:25913871 1.34E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77864 PF00069 Pkinase 7.70E-54 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00082 K04368 - csv:101218848 513.072