Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00103 ATGGCCGACGCCACCGTGCCGGACATCGACTCCGGTGGTGCCAATTCCTCCTCGTCCTCGTCTTCGTCCTCGACGTCAGGTTCAATATCGTCTCCATCAAAACAAGCCATTGGTCGAAGACCGAAGCGCGGTCGAGAAAGCAGCAACAATAGTCCTCACCCAAGTTACCGCGGCGTCCGAATGAGGGCGTGGGGTAAATGGGTGTCCGAAATTCGAGAGCCGAAGAAAAAGAGTCGGATCTGGCTCGGCACCTTCGCTACACCTGACATGGCAGCACGTGCTCACGACGTAGCTGCTCTTACTATCAAAGGCAATTCCGCCATCCTTAATTTCCCTGAACTCGCCGCCTCATTCCCCCGTCCCGCCTCCTCCTCTCCTCGCGACGTTCAATCCGCTGCTGCTCTTGCTGCTTCAATGCAACTTCCTGATGTCATGATCTCACCTCCACCACCTCCGCCATCACCACCCTCATCGCCTCCGTGTTCGTCGTCGTCCGAGTTGGATGAGTCGACACCAGAGGAATTGAGTGAAATTGTTGTATTGCCAAGTTTGGGGACAGGGTACGAGGAATCGGCTGAGTCGGTGACCGAGTTCGTGTTTGATGAGTGGCAATATAGCTATGGGCCATGGGATCAAGAAAAGGATAGCTCAAAAGAAGAAGAAGAAGGTTATGAATACTTTATAGATCAAACGGCAATGGCGGAAAGAGAGTGTGTGATTCCTACTGCATTATTTCAACCTTTATCTTTCTCGTGGTAA 759 52.31 MADATVPDIDSGGANSSSSSSSSSTSGSISSPSKQAIGRRPKRGRESSNNSPHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPDVMISPPPPPPSPPSSPPCSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYGPWDQEKDSSKEEEEGYEYFIDQTAMAERECVIPTALFQPLSFSW* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 717915 719821 - CsaV3_2G002020.1 Csa02g00103 518160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00103 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 MobiDBLite consensus disorder prediction 144 160 - -
Csa02g00103 252 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 235 - -
Csa02g00103 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 MobiDBLite consensus disorder prediction 10 35 - -
Csa02g00103 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 235 - -
Csa02g00103 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 MobiDBLite consensus disorder prediction 1 63 - -
Csa02g00103 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Csa02g00103 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Csa02g00103 252 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Csa02g00103 252 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00103 Csa-Chr2:717915 Csa03g04550 Csa-Chr3:39659241 3.61E-44 dispersed
Csa05g03184 Csa-Chr5:31560805 Csa02g00103 Csa-Chr2:717915 1.25E-30 dispersed
Csa06g02658 Csa-Chr6:23400570 Csa02g00103 Csa-Chr2:717915 3.60E-30 dispersed
Csa01g02038 Csa-Chr1:17372663 Csa02g00103 Csa-Chr2:717915 6.75E-69 transposed
Csa03g00257 Csa-Chr3:2069964 Csa02g00103 Csa-Chr2:717915 4.86E-46 transposed
Csa03g00749 Csa-Chr3:6659341 Csa02g00103 Csa-Chr2:717915 1.12E-39 transposed
Csa03g02368 Csa-Chr3:21466638 Csa02g00103 Csa-Chr2:717915 1.30E-42 transposed
Csa04g00219 Csa-Chr4:1312269 Csa02g00103 Csa-Chr2:717915 1.76E-16 transposed
Csa05g03122 Csa-Chr5:31166186 Csa02g00103 Csa-Chr2:717915 9.27E-29 transposed
Csa06g00865 Csa-Chr6:6942444 Csa02g00103 Csa-Chr2:717915 3.83E-40 transposed
Csa02g00103 Csa-Chr2:717915 Csa07g02268 Csa-Chr7:21132427 2.18E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30851 PF00847 AP2 7.40E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00103 K09286 - csv:101212945 408.683