Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g00116 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACTCTCGGCCAGATATCATCCACAAGTACGAGATCCTCGAGCGCGTCGGATCCGGCGCTTATTCCGATGTCTACCGTGCACGGCGGCTATCCGATGGTGTCATCGTCGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCTCTTCAAATCCTTCAAGGTTCGCCTAATATCGTAGTTTTGCACGAGTACTTTTGGCGGGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCTACCGTTATAGCAGAGGCAAAGAAGATAGGATCGGATGGTGTAGACTCTGGGCGTGGGCTTGCGGTTGGGGAGTTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCTGATGATGGCATGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGATCCTGATTATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATCAACTCTTCAGATCAAGTACCGTCTTCTCAGCCATCTGCAGTTCTTCCTGGAACAGAAAGCTTGGTTCGAGAGGGTAATAGAAATGAAGAGCAAGAAACAATTAGCAAAGAGGAATATTTTAGAGTTTTAGATGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAAGAAACATGTACTTATGATGGAGATACTTCTTGCTTAGCAACATGTACCACAAGTGATCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCCGATGATGGACACGGTCCTCTCACTTCATGTGTCGGTACTCGCTGGTTCAGAGCCCCTGAATTACTCTATGGCTCTACAAGCTACGGTTTGGAGATCGATTTGTGGTCATTGGGCTGTATTTTTGCAGAACTTTTAACATTGGAACCCCTTTTTCCAGGAACTGCTGATATCGATCAAATGAGCAGAATTTTTGCTACTCTAGGCAACTTGACTGAAGAGTCATGGCCTGGTTGTTCCGAACTTCCTGATTTTCAGATTATATCATTCAACACAATCGAAAAGCCAATTGGTTTAGAAGCACGTCTTCCCAACTGTTCTTCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGTGCAACTGCTATGGAATTGCTACAAGATAAGTATTTCACCGAGGAGCCACTTCCCGTTCCCTTGTCCGAGCTTCACGTTCCTTCGACCAAAAATGTACAGGACGAGGATTCTCCTGCAGGATGGTACGATTACAACGAGTCAGATTCTGATATGGATGAACTCGGCCCATTGAATGTTACCACCAATGCCACTGGTTACTCCATACAATTTGATTGA 1449 44.51 MEPSSAKSWSIHSRPDIIHKYEILERVGSGAYSDVYRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKIGSDGVDSGRGLAVGELKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGMLKLADFGQARILMDPDYVESNEISQPCEINSSDQVPSSQPSAVLPGTESLVREGNRNEEQETISKEEYFRVLDELKAKNSANEFDKETCTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGHGPLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQMSRIFATLGNLTEESWPGCSELPDFQIISFNTIEKPIGLEARLPNCSSDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPSTKNVQDEDSPAGWYDYNESDSDMDELGPLNVTTNATGYSIQFD* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 814024 817099 + CsaV3_2G002150.1 Csa02g00116 518173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g00116 482 PANTHER CELL DIVISION PROTEIN KINASE 18 447 - -
Csa02g00116 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00116 482 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00116 482 SUPERFAMILY Protein kinase-like (PK-like) 8 444 IPR011009 -
Csa02g00116 482 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Csa02g00116 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00116 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Csa02g00116 482 SMART serkin_6 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g00116 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Csa02g00116 482 PANTHER CYCLIN-DEPENDENT KINASE 10 18 447 - -
Csa02g00116 482 Gene3D Transferase(Phosphotransferase) domain 1 263 442 - -
Csa02g00116 482 Gene3D Transferase(Phosphotransferase) domain 1 114 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00116 Csa-Chr2:814024 Csa01g00416 Csa-Chr1:2598315 9.00E-22 dispersed
Csa02g00116 Csa-Chr2:814024 Csa05g02741 Csa-Chr5:28151896 6.37E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77866 PF00069 Pkinase 2.60E-33 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g00116 - - csv:101209606 977.622